Browse Element(s) Details


Os.21800.1.S1_at

Description gb:AK109717.1
DB_XREF= gi:32994926
TID=Os.21800.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A01, full insert sequence.
FL= gb:AK109717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g452701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45230OsAffx.21897.5.S1_x_at4/1111+26863725..26866665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein
LOC_Os11g45270Os.21800.1.S1_at1/1111+26887614..26888330hypothetical protein
LOC_Os11g45280OsAffx.19386.1.S1_at10/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45280Os.18506.1.S1_at9/1111+26892991..26899772PAS domain containing protein, expressed
LOC_Os11g45290Os.16043.1.S1_at11/1111+26901200..26903186expressed protein
LOC_Os11g45320OsAffx.7419.1.S1_at11/1111+26909932..26913251hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21800.1.S1_at--346--4932Chr11:26887703..26887726 (24 bp)
GCTTGAGTGCTTCTCTATGCAGCAG
LOC_Os11g45270
Os.21800.1.S1_at--117--1331Chr03:5197753..5197777 (25 bp)
AGAGGCTGACATTTGGAACTCACGT
NONE
Os.21800.1.S1_at--839--5473Chr04:32969614..32969670 (24 bp)
GAACTCACGTGGGTTCTACGCTGAG
NONE
Os.21800.1.S1_at--768--8891Chr03:5197712..5197736 (25 bp)
TGAGGGATGCGCTGAATCCGGTTTT
NONE
Os.21800.1.S1_at--563--131Chr03:5197580..5197604 (25 bp)
ATTAGCTACCGCACCGGGCGAAGTG
NONE
Os.21800.1.S1_at--275--5491Chr03:5197484..5197508 (25 bp)
GAAAATACACTTGTGGGCTTTCCGG
NONE
Os.21800.1.S1_at--141--8291Chr03:5197469..5197493 (25 bp)
GGCTTTCCGGTTCTGGACTGGAATA
NONE
Os.21800.1.S1_at--819--5731Chr03:5197454..5197478 (25 bp)
GACTGGAATAAACCTCTCACCGAAA
NONE
Os.21800.1.S1_at--718--3731Chr03:5197439..5197463 (25 bp)
CTCACCGAAAACTTCATGGGCCTTA
NONE
Os.21800.1.S1_at--200--6031Chr03:5197391..5197415 (25 bp)
GAGAGGTGCACAGGTACCCGCTCCA
NONE
Os.21800.1.S1_at--814--9751Chr03:5197319..5197343 (25 bp)
TAAGTAGTCTCCATATTCGTAGTAT
NONE
Target Sequence 
GCTTGAGTGCTTCTCTATGCAGCAGGAGTGAGAGGCCAAGTCTTGAGGGGTCTGTGGACTTGGTCTATGGAGGCTATCCA
ACAAAGGGAGGGGAAGAAGAGGCTGACATTTGGAACTCACGTGGGTTCTACGCTGAGTTGAGGGATGCGCTGAATCCGGT
TTTGCGGTTCAAGGACGATTTTATAACTCGATGATAAGTTGAGGCACCTTCGGTGTACTTTTTCCCACCCCCCACAGGCC
ACGGTACCCCACCTCGCGACGCCGGCCCAGATTAGCTACCGCACCGGGCGAAGTGGAAGCCGAAGCCCACATGCACCTTT
TTGCCGGGCTGGCTTGGTGCGCGCGTTGACGCGTCCATCGCGTGGGGAAAATACACTTGTGGGCTTTCCGGTTCTGGACT
GGAATAAACCTCTCACCGAAAACTTCATGGGCCTTACCACAGAAACATATGCAGGGTCCGAGAGGTGCACAGGTACCCGC
TCCAAAACATAAAACATATAACCTATTATTATCAGGTTGGATATTAACTAATAAGTAGTCTCCATATTCGTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis