Browse Element(s) Details


Os.21893.3.A1_at

Description gb:AK099398.1
DB_XREF= gi:32984607
TID=Os.21893.3
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O13, full insert sequence.
FL= gb:AK099398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3198010/11trehalose-6-phosphate synthase, putative, expressed
LOC_Os05g061605/11Trehalose-phosphatase family protein, expressed
LOC_Os01g207201/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31990OsAffx.31264.2.S1_at10/118+19709192..19710744hypothetical protein
LOC_Os08g31990Os.38395.5.S1_at1/118+19709192..19710744hypothetical protein
LOC_Os08g32000OsAffx.17286.1.S1_at11/118+19719246..19719512hypothetical protein
LOC_Os08g32010OsAffx.29460.1.S1_at10/118+19725548..19726611hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21893.3.A1_at--152--1691Chr08:19697912..19697936 (25 bp)
AGCCATGGACGTGTGACCTTCAGGG
LOC_Os08g31980
Os.21893.3.A1_at--106--2653Chr05:3073048..3073072 (25 bp)
AACCACCTAATCTTTGTAACATCCA
LOC_Os05g06160
Os.21893.3.A1_at--355--574Chr12:19353775..19353799 (25 bp)
ATCCAAACTTGTGTACATTCCAATG
NONE
Os.21893.3.A1_at--434--2991Chr08:19697824..19697848 (25 bp)
AATGTCTTCATCTAGATTTGGCCAA
LOC_Os08g31980
Os.21893.3.A1_at--580--10231Chr08:19697808..19697832 (25 bp)
TTTGGCCAAAAGCATGAATCATCAC
LOC_Os08g31980
Os.21893.3.A1_at--487--5255Chr12:19353827..19353851 (25 bp)
GAATCATCACCACCATTAGGACAAC
NONE
Os.21893.3.A1_at--91--5614Chr12:19353846..19353870 (25 bp)
GACAACTACAGGAGTGCAAGCGGAA
NONE
Os.21893.3.A1_at--1002--511Chr08:19697633..19697657 (25 bp)
ATCGACTTGTTTCACTTGCCAGTTA
LOC_Os08g31980
Os.21893.3.A1_at--696--4412Chr05:3073305..3073328 (24 bp)
GCCAGTTATTACCAGTTGCCAGTGT
LOC_Os05g06160
Os.21893.3.A1_at--446--5573Chr12:19354119..19354143 (25 bp)
GAAAGTTGCATTATGCCATCATGGA
NONE
Os.21893.3.A1_at--768--8154Chr12:19354141..19354165 (25 bp)
GGAAACCTTCTAACTCTTATTTGCT
NONE
Target Sequence 
AGCCATGGACGTGTGACCTTCAGGGATGTGATGGATTATGTGGANTGAACCACCTAATCTTTGTAACATCCAAACTTGTG
TACATTCCAATGTCTTCATCTAGATTTGGCCAAAAGCATGAATCATCACCACCATTAGGACAACTACAGGAGTGCAAGCG
GAAGCTCNGCATTTTTAGTTTAGGTGATGTATACTCATATGTAGGCAATTTTGATAGTTGANGAGGTTCTTGCTGGAGAA
CTGCACTGTGAAAGAAAAGCCCCCTGGCTTTGAATAGNNNNNNNNCCATCGACTTGTTTCACTTGCCAGTTATTACCAGT
TGCCAGTGTTTACNTGAATGACTGAATCCAATNTCCTACTTCNCATTGATGNNNGTGTTGGGCTTTTGGAAATTATATCT
TGGAGAAAGTTGCATTATGCCATCATGGAAACCTTCTAACTCTTATTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21893.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis