Browse Element(s) Details


Os.2226.1.S1_at

Description gb:AF042840.1
DB_XREF= gi:3617841
GEN=CaM1
TID=Os.2226.1
CNT=86
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2226 (NCBI UniGene Cluster)
DEF=Oryza sativa clone F14605 calmodulin (CaM1) mRNA, complete cds.
PROD=calmodulin
FL= gb:AF042840.1 gb:AK070090.1 gb:AK059756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2037011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2226.1.S1_at--415--6231Chr03:11502911..11502935 (25 bp)
GATGGCCAAGTGAGGCACCACTTCC
LOC_Os03g20370
Os.2226.1.S1_at--853--2051Chr03:11502930..11502954 (25 bp)
ACTTCCCCTGCCGATGATGGCATAG
LOC_Os03g20370
Os.2226.1.S1_at--336--711Chr03:11502943..11502967 (25 bp)
ATGATGGCATAGTACCCTGGGAGGA
LOC_Os03g20370
Os.2226.1.S1_at--142--6191Chr03:11502966..11502990 (25 bp)
GAGGAAACCGTGCATTGCCGTATTA
LOC_Os03g20370
Os.2226.1.S1_at--851--7971Chr03:11502997..11503021 (25 bp)
GGATGCAAACACTGGTTTCAGTCGT
LOC_Os03g20370
Os.2226.1.S1_at--773--6831Chr03:11503011..11503035 (25 bp)
GTTTCAGTCGTCTTCCCTGATGAAG
LOC_Os03g20370
Os.2226.1.S1_at--1004--10711Chr03:11503060..11503084 (25 bp)
TTGCTGAACATTTTTCTATCTCTCC
LOC_Os03g20370
Os.2226.1.S1_at--231--1151Chr03:11503085..11503109 (25 bp)
AGTCTCTCCGGTGTGCCATGGAACT
LOC_Os03g20370
Os.2226.1.S1_at--52--7291Chr03:11503097..11503121 (25 bp)
GTGCCATGGAACTTCTTGCTTGATT
LOC_Os03g20370
Os.2226.1.S1_at--110--491Chr03:11503133..11503157 (25 bp)
ATCTGTTAAGGCTTGCTCTGATCTC
LOC_Os03g20370
Os.2226.1.S1_at--321--6411Chr03:11503152..11503176 (25 bp)
GATCTCTCCGAACCCTGAATTGCAT
LOC_Os03g20370
Target Sequence 
GATGGCCAAGTGAGGCACCACTTCCCCTGCCGATGATGGCATAGTACCCTGGGAGGAGGAAACCGTGCATTGCCGTATTA
GTAAGGGGATGCAAACACTGGTTTCAGTCGTCTTCCCTGATGAAGAAAACCGAACCNGTACTAGTTGTAGTTGCTGAACA
TTTTTCTATCTCTCCAGTCTCTCCGGTGTGCCATGGAACTTCTTGCTTGATTTTTCTGTGTGAATCTGTTAAGGCTTGCT
CTGATCTCTCCGAACCCTGAATTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis