Browse Element(s) Details


Os.2241.1.S1_a_at

Description gb:AK059818.1
DB_XREF= gi:32969836
TID=Os.2241.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.2241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) glutathione S-transferase II (P0403C05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C06, full insert sequence.
FL= gb:AK099142.1 gb:AK059818.1 gb:AF062403.1 gb:AK058894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5583011/11glutathione S-transferase GSTF2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0005886cellular_componentplasma membrane
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2241.1.S1_a_at--766--8971Chr01:32475542..32475566 (25 bp)
TGAACCCCATTCTTTTTCAGTGCCT
LOC_Os01g55830
Os.2241.1.S1_a_at--893--10471Chr01:32475527..32475551 (25 bp)
TTCAGTGCCTAATCCGTCCGATGAT
LOC_Os01g55830
Os.2241.1.S1_a_at--987--1871Chr01:32475431..32475455 (25 bp)
ACGAGGCGCGCCTGACGAAGTGCAA
LOC_Os01g55830
Os.2241.1.S1_a_at--452--2651Chr01:32475237..32475261 (25 bp)
AAGCCTCCTGCTTAAGGTAGTTGTT
LOC_Os01g55830
Os.2241.1.S1_a_at--1042--8771Chr01:32475216..32475240 (25 bp)
TGTTCTAGGCACAGGTTTGTCGTCC
LOC_Os01g55830
Os.2241.1.S1_a_at--577--10251Chr01:32475201..32475225 (25 bp)
TTTGTCGTCCATGGTCCACAGAATA
LOC_Os01g55830
Os.2241.1.S1_a_at--619--9791Chr01:32475178..32475202 (25 bp)
TAAGCTGAGGTGTGCCCAGTTGGTT
LOC_Os01g55830
Os.2241.1.S1_a_at--957--4511Chr01:32475165..32475189 (25 bp)
GCCCAGTTGGTTGCTCGTTTAAGGA
LOC_Os01g55830
Os.2241.1.S1_a_at--394--6791Chr01:32475084..32475108 (25 bp)
GTTATGCTGCATATGATCCAACCTA
LOC_Os01g55830
Os.2241.1.S1_a_at--927--6351Chr01:32475070..32475094 (25 bp)
GATCCAACCTAAGTCTTGTACTGCT
LOC_Os01g55830
Os.2241.1.S1_a_at--915--8431Chr01:32475026..32475050 (25 bp)
GGCCTTCGCTCTTGAGAACCTTATA
LOC_Os01g55830
Target Sequence 
TGAACCCCATTCTTTTTCAGTGCCTAATCCGTCCGATGATGNTTTGGGGCACCCCCCGACGAGAAAGTTGTTGAGGAGAA
CCTTGAGAAGCTGAAGAAGGTGTTGGAGGTGTACGAGGCGCGCCTGACGAAGTGCAAGTACCTGGCTGGAGACTACATCA
GTGTCGCGGACCTAAGCCATGTGGCTGGCACTGTATGCTTGGGGGCTACTCCCCACGCATCCGTGTTGGACGCATACCCG
CATGTGAAGGCCTGGTGGACTGACCTGATGGCAAGGCCGTCTTCCCAGAAGGTGGCTTCACTGATGAAGCCTCCTGCTTA
AGGTAGTTGTTCTAGGCACAGGTTTGTCGTCCATGGTCCACAGAATAAGCTGAGGTGTGCCCAGTTGGTTGCTCGTTTAA
GGATTTGTGTTATTATGTGTGTCCTGGATGTTGAATGTTCAAGCAATCAGGATTGTGTTGTTATGCTGCATATGATCCAA
CCTAAGTCTTGTACTGCTATGAGCATTNCTTGTGCTCTGGCCTTCGCTCTTGAGAACCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2241.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis