Browse Element(s) Details


Os.22483.1.A1_s_at

Description gb:CA762080
DB_XREF= gi:25806119
DB_XREF=BR060013A20G06.ab1
CLONE=BR060013A20G06.ab1
TID=Os.22483.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22483 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_176088.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6251011/11FAD dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein
LOC_Os03g62530OsAffx.13585.1.S1_at11/113+35346485..35347515hypothetical protein
LOC_Os03g62539OsAffx.13586.2.S1_at11/113+35349356..35351555hypothetical protein
LOC_Os03g62550Os.54917.1.S1_at11/113+35353014..35354937expressed protein
LOC_Os03g62560NANA3+35358735..35359684hypothetical protein
LOC_Os03g62570OsAffx.25797.1.S1_at11/113+35361002..35361877hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009662biological_processetioplast organization and biogenesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016491molecular_functionoxidoreductase activity
GO:0046608molecular_functioncarotenoid isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22483.1.A1_s_at--1064--7911Chr03:35332921..35332945 (25 bp)
GGTTGGATCACCATTAACACACAAG
LOC_Os03g62510
Os.22483.1.A1_s_at--469--2191Chr03:35332905..35332929 (25 bp)
ACACACAAGAGGTTCCTCCGAAGAA
LOC_Os03g62510
Os.22483.1.A1_s_at--256--291Chr03:35332880..35332904 (25 bp)
ATAGAGGAACCTATGGTCCAGCCAT
LOC_Os03g62510
Os.22483.1.A1_s_at--1062--10291Chr03:35332837..35332861 (25 bp)
TTTCCCTGGGCAGGCAACACCTATA
LOC_Os03g62510
Os.22483.1.A1_s_at--245--1571Chr03:35332808..35332832 (25 bp)
AGCTATTCTGCTGTGGTGACTCGAC
LOC_Os03g62510
Os.22483.1.A1_s_at--65--5651Chr03:35332786..35332810 (25 bp)
GACTTTTCCAGGCATCGGTGTACCG
LOC_Os03g62510
Os.22483.1.A1_s_at--41--8431Chr03:35332762..35332786 (25 bp)
GGCCGTCGCTGCAAGTGGTGCAATT
LOC_Os03g62510
Os.22483.1.A1_s_at--966--1451Chr03:35332557..35332581 (25 bp)
AGAATACTACTGTGTGGAGCTTTTG
LOC_Os03g62510
Os.22483.1.A1_s_at--6--10471Chr03:35332505..35332529 (25 bp)
TTAAAAGCTAAGTTCATCCTCCCCA
LOC_Os03g62510
Os.22483.1.A1_s_at--320--10251Chr03:35332052..35332076 (25 bp)
TTTGAGTTATTTTCTGTGACCCGAT
LOC_Os03g62510
Os.22483.1.A1_s_at--128--7371Chr03:35332037..35332061 (25 bp)
GTGACCCGATTGTCGTTTACAACTA
LOC_Os03g62510
Target Sequence 
GGTTGGATCACCATTAACACACAAGAGGTTCCTCCGAAGAAATAGAGGAACCTATGGTCCAGCCATAAAAGCTGGGGAGN
CCACTTTCCCTGGGCAGGCAACACCTATACNCCCAGCTATTCTGCTGTGGTGACTCGACTTTTCCAGGCATCGGTGTACC
GGCCGTCGCTGCAAGTGGTGCAATTGTCGCAAACACGCTAGTCTCCGTGTCACAACATTCAGAGCTTCTTGATGCTGTTG
GAATTTGACATGCAGACGTGCAGAATACTACTGTGTGGAGCTTTTGACAGAGATCAATATTAATCTATGAAGATTAAAAG
CTAAGTTCATCCTCCCCACATGCAGAGGTAGGCAGGCAGATCTGTGGATAACAGTATATGACTACATTACAACATACAGT
AGATACTACAAGAAACATATGGATAAGCAGGAATTTTACATTNGGATAATTTTGAGTTATTTTCTGTGACCCGATTGTCG
TTTACAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22483.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis