Browse Element(s) Details


Os.22522.1.A1_a_at

Description gb:AK062472.1
DB_XREF= gi:32972490
TID=Os.22522.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E12, full insert sequence.
FL= gb:AK062472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4719011/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47160OsAffx.14308.2.S1_at11/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47160OsAffx.14308.1.S1_x_at1/114+27782537..27784819Subtilisin N-terminal Region family protein, expressed
LOC_Os04g47170OsAffx.26497.1.S1_at11/114+27794627..27796694pollen-specific kinase partner protein, putative, expressed
LOC_Os04g47180Os.5902.1.S2_at11/114+27796943..27802869expressed protein
LOC_Os04g47180Os.5902.1.S1_at11/114+27796943..27802869expressed protein
LOC_Os04g47190Os.22522.1.A1_a_at11/114+27807363..27811467Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g47200OsAffx.26498.1.S1_at10/114+27814011..27815573expressed protein
LOC_Os04g47210Os.43567.1.S1_x_at4/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47210Os.38172.1.S1_x_at2/114+27822386..27823166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47220Os.11386.1.S1_at11/114+27827487..27829439Aquaporin RWC3, putative, expressed
LOC_Os04g47240Os.11767.1.S1_s_at11/114+27830151..27837777YDA, putative, expressed
LOC_Os04g47240Os.11767.1.S1_at10/114+27830151..27837777YDA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22522.1.A1_a_at--451--6811Chr04:27808428..27808452 (25 bp)
GTTTTCTGTACTGGAACTTCTGTGG
LOC_Os04g47190
Os.22522.1.A1_a_at--81--5491Chr04:27808415..27808439 (25 bp)
GAACTTCTGTGGTACTATCCTCTGT
LOC_Os04g47190
Os.22522.1.A1_a_at--62--9271Chr04:27808398..27808422 (25 bp)
TCCTCTGTTGGTTGCATAGTGTACC
LOC_Os04g47190
Os.22522.1.A1_a_at--461--6751Chr04:27807920..27807944 (25 bp)
GTTCAGAACTGTGTCTCAGCAACTC
LOC_Os04g47190
Os.22522.1.A1_a_at--1064--9651Chr04:27807905..27807929 (25 bp)
TCAGCAACTCTATTCAGCACTTACG
LOC_Os04g47190
Os.22522.1.A1_a_at--1156--1491Chr04:27807890..27807914 (25 bp)
AGCACTTACGGCTATCCAGAAAGGC
LOC_Os04g47190
Os.22522.1.A1_a_at--785--4991Chr04:27807641..27807665 (25 bp)
GCATGAACTGTTTCTTCTGACTCTA
LOC_Os04g47190
Os.22522.1.A1_a_at--502--8951Chr04:27807624..27807648 (25 bp)
TGACTCTATTACCTTTCTTACTGAC
LOC_Os04g47190
Os.22522.1.A1_a_at--93--10571Chr04:27807610..27807634 (25 bp)
TTCTTACTGACCATACTTCCAGTGT
LOC_Os04g47190
Os.22522.1.A1_a_at--425--3091Chr04:27807584..27807608 (25 bp)
AATAAGTGCTCCTTGCTTATCCGAG
LOC_Os04g47190
Os.22522.1.A1_a_at--654--10311Chr04:27807568..27807592 (25 bp)
TTATCCGAGGCCATATTCCGTGCAT
LOC_Os04g47190
Target Sequence 
GTTTTCTGTACTGGAACTTCTGTGGTACTATCCTCTGTTGGTTGCATAGTGTACCAGGGGAGAAGAGTGGAGTATGGGAA
CCAGAAGTTCAGAACTGTGTCTCAGCAACTCTATTCAGCACTTACGGCTATCCAGAAAGGCCTCGTGGAGGACAGTATGG
GATGGACTGTGCAACTGAATTAGTAGCCTGGTCGTTATGGACGGTCTTAAGGTTCTTCCTGTCAAATAGTGCTTTCTTGT
TTGAAGCAGCAATAAAGAAATTCACCGAATTTTCTCATTTCAGGCAGTATAGAATAGAGAATCACCTCTTGTGCATATGC
AGGTACACACAGTATACAAATAATCTGGGGCCCAGAGATAGAGAAGCATGAACTGTTTCTTCTGACTCTATTACCTTTCT
TACTGACCATACTTCCAGTGTAAATAAGTGCTCCTTGCTTATCCGAGGCCATATTCCGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22522.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis