Browse Element(s) Details


Os.22580.1.S1_s_at

Description gb:AK060804.1
DB_XREF= gi:32970822
TID=Os.22580.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0483G10.26 (P0483G10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F08, full insert sequence.
FL= gb:AK065858.1 gb:AK060804.1 gb:AK104613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7325011/11ABA/WDS induced protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed
LOC_Os01g73310Os.18675.1.S1_at11/111+42810921..42814292Actin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22580.1.S1_s_at--492--3391Chr01:42787809..42788273 (25 bp)
CAGCGGCGCCTTCGCTCTCTATGAG
LOC_Os01g73250
Os.22580.1.S1_s_at--802--1791Chr01:42788380..42788404 (25 bp)
ACCGCGAGCAGAAGCAGGCCAGCTA
LOC_Os01g73250
Os.22580.1.S1_s_at--1082--4071Chr01:42788384..42788408 (25 bp)
CGAGCAGAAGCAGGCCAGCTACGGC
LOC_Os01g73250
Os.22580.1.S1_s_at--97--1091Chr01:42788452..42788476 (25 bp)
AGGGCTACTACTGCAACTGATTAAT
LOC_Os01g73250
Os.22580.1.S1_s_at--501--131Chr01:42788496..42788520 (25 bp)
ATTAATAATCCATGCGTACGTACGT
LOC_Os01g73250
Os.22580.1.S1_s_at--182--511Chr01:42788507..42788531 (25 bp)
ATGCGTACGTACGTACCACTAAATA
LOC_Os01g73250
Os.22580.1.S1_s_at--993--3311Chr01:42788523..42788547 (25 bp)
CACTAAATAAATACTGGCTACTACG
LOC_Os01g73250
Os.22580.1.S1_s_at--875--3091Chr01:42788532..42788556 (25 bp)
AATACTGGCTACTACGTACGTATAT
LOC_Os01g73250
Os.22580.1.S1_s_at--942--6291Chr01:42788571..42788595 (25 bp)
GATGAGCAAGGATGTACGTACGTAC
LOC_Os01g73250
Os.22580.1.S1_s_at--220--7411Chr01:42788690..42788714 (25 bp)
GTGATTTCTGTAAACGTGTGGCCAT
LOC_Os01g73250
Os.22580.1.S1_s_at--1059--7531Chr01:42788707..42788731 (25 bp)
GTGGCCATCGGATCGATGAATTCTA
LOC_Os01g73250
Target Sequence 
CAGCGGCGCCTTCGCTCTCTATGAGGGGCACCAGGCGAAGAAGGACCCGGCGAACGCGCAGAGGCACAGGATCGAGCAGG
GCGTGGCGGCGGTGGCGGCGGTGGGCGCCGGNNGCTACGCCTACCACGAGCACCGCGAGCAGAAGCAGGCCAGCTACGGC
GCCAAGGAGCAGCAGTNACGGCTACGCCAGGATGCCGCAGCAGCAGGGCTACTACTGCAACTGATTAATTATTAATCACC
CCCAAATTATTAATAATCCATGCGTACGTACGTACCACTAAATAAATACTGGCTACTACGTACGTATATATACGGTACAA
TAAGATGAGCAAGGATGTACGTACGTACACGTATATACGTTGCTCACCCACAATTTCGCCGCCGCGGCCGCGCGCCTTAT
TCCAAACCAGTGTATGTGTGTACGTACATCTATATATGTACTGTGATTTCTGTAAACGTGTGGCCATCGGATCGATGAAT
TCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22580.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis