Browse Element(s) Details


Os.22588.1.S1_at

Description gb:AK069110.1
DB_XREF= gi:32979134
TID=Os.22588.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009F11, full insert sequence.
FL= gb:AK069110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4923010/11N-acetyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22588.1.S1_at--382--6771Chr03:27990441..27990465 (25 bp)
GTTACAGCAGTGTCTGTTGCCACAG
LOC_Os03g49230
Os.22588.1.S1_at--848--2951Chr03:27989333..27989357 (25 bp)
AAGGCCTACTTTGTGGATCTCTTCG
LOC_Os03g49230
Os.22588.1.S1_at--771--2691Chr03:27989012..27989035 (24 bp)
AAGCTTGGCTATGTGGTTTATCGAA
LOC_Os03g49230
Os.22588.1.S1_at--142--10331Chr03:27988996..27989020 (25 bp)
TTTATCGAAGGGTGCTCCGCTATTA
LOC_Os03g49230
Os.22588.1.S1_at--144--1471Chr03:27988820..27988844 (25 bp)
AGAAGTCCATCATACCACTGAAGAG
LOC_Os03g49230
Os.22588.1.S1_at--913--1211Chr03:27988750..27988774 (25 bp)
AGTTACTTCCAGTGTTTTGTTTGCT
LOC_Os03g49230
Os.22588.1.S1_at--211--211Chr03:27988709..27988733 (25 bp)
ATTTGCCAAGTGTCTTTTGTCTCCA
LOC_Os03g49230
Os.22588.1.S1_at--671--10811Chr03:27988693..27988717 (25 bp)
TTGTCTCCAGTAGTATCATCTAGTG
LOC_Os03g49230
Os.22588.1.S1_at--276--3711Chr03:27988674..27988698 (25 bp)
CTAGTGATCGTGCTGTTTTCTTTTC
LOC_Os03g49230
Os.22588.1.S1_at--117--7331NONE
GTGCTATCTTGTAACCGTACCGTTA
NONE
Os.22588.1.S1_at--390--171Chr03:27988532..27988556 (25 bp)
ATTTTCTTGTATCGAGGAGTTCCAC
LOC_Os03g49230
Target Sequence 
GTTACAGCAGTGTCTGTTGCCACAGAATTTCGGAGGCAGAAGCTAGCCAAAAAACTTATGAACCTTTTGGAGGAAATCAG
TGNCAAGATGGATAAGGCCTACTTTGTGGATCTCTTCGTAAGAGCATCTAACATGCCAGCAATAAGGATGTATGAAAAGC
TTGGCTATGTGGTTTATCGAAGGGTGCTCCGCTATTACTCAGGGGAAGAAGATGGCCTTGATATGAGGAAAGCTTTGTCN
CAAGACGTTGAAAAGAAGTCCATCATACCACTGAAGAGACCAATAACACCGGATGAACTTGAATATGATTGAAGTTAACT
TCTAGTTACTTCCAGTGTTTTGTTTGCTGTTAACTTCTATGGTGATTTGCCAAGTGTCTTTTGTCTCCAGTAGTATCATC
TAGTGATCGTGCTGTTTTCTTTTCTGCATCCTGATAAGATTCAACATAACTCTGAAGGTGATTCTATCGTTTTGGAATGG
AATGCAGCACTTAGTAAGTAGTCTATCTTGGAATGAGGTGCTATCTTGTAACCGTACCGTTATTTTCTTGTATCGAGGAG
TTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis