Browse Element(s) Details


Os.22596.1.S1_s_at

Description gb:CF309035
DB_XREF= gi:33680796
DB_XREF=ABF--03-B05.g1
CLONE=ABF--03-B05
TID=Os.22596.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22596 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567222.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2873010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28680OsAffx.20387.1.S1_x_at2/115+16740304..16746018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28690OsAffx.4459.1.S1_at11/115+16749313..16750966hypothetical protein
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein
LOC_Os05g28720Os.24294.1.A1_at11/115+16764919..16767041pentatricopeptide, putative, expressed
LOC_Os05g28730Os.22596.1.S1_s_at10/115+16769917..16772537Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g28740Os.22312.3.A1_a_at11/115+16778701..16779979universal stress protein family protein, expressed
LOC_Os05g28750Os.1082.1.S1_a_at10/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_x_at3/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28750Os.1082.1.S1_at2/115+16780717..1678171460S ribosomal protein L29, putative
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22596.1.S1_s_at--247--5771Chr05:16770337..16770452 (25 bp)
GACGATAACGTTCACCATTATGCTG
LOC_Os05g28730
Os.22596.1.S1_s_at--911--8611Chr05:16770311..16770335 (25 bp)
TGGTGTGGCATCTCATTGCAGTGGT
LOC_Os05g28730
Os.22596.1.S1_s_at--534--8991Chr05:16770280..16770304 (25 bp)
TGAAGCGGCGGATCACTGTGCATTC
LOC_Os05g28730
Os.22596.1.S1_s_at--959--1951NONE
ACTGTGCATTCAGCCTTGTCACAAT
NONE
Os.22596.1.S1_s_at--807--2051Chr05:16770162..16770186 (25 bp)
ACTTCGGGCTGCTGGAATCTTGTTG
LOC_Os05g28730
Os.22596.1.S1_s_at--280--3071Chr05:16770147..16770171 (25 bp)
AATCTTGTTGCCGTTCTATGCTATC
LOC_Os05g28730
Os.22596.1.S1_s_at--205--10551Chr05:16770134..16770158 (25 bp)
TTCTATGCTATCATGCGGATGGTCC
LOC_Os05g28730
Os.22596.1.S1_s_at--1040--3951Chr05:16770119..16770143 (25 bp)
CGGATGGTCCGCATGATTCAGCAGG
LOC_Os05g28730
Os.22596.1.S1_s_at--352--131Chr05:16770104..16770128 (25 bp)
ATTCAGCAGGGCCAACGACAGTTTC
LOC_Os05g28730
Os.22596.1.S1_s_at--877--1851Chr05:16770090..16770114 (25 bp)
ACGACAGTTTCGGTTGCAGCTGCTT
LOC_Os05g28730
Os.22596.1.S1_s_at--962--5071Chr05:16769923..16769947 (25 bp)
GCACCAGCAGCTTGTAATTAATGTT
LOC_Os05g28730
Target Sequence 
GACGATAACGTTCACCATTATGCTGCTGGTGTGGCATCTCATTGCAGTGGTGACAATTGAAGCGGCGGATCACTGTGCAT
TCAGCCTTGTCACAATNTTCTTACTTCGGGCTGCTGGAATCTTGTTGCCGTTCTATGCTATCATGCGGATGGTCCGCATG
ATTCAGCAGGGCCAACGACAGTTTCGGTTGCAGCTGCTTCAGGATCAACGGAGAAGAAACGCATCAAACTTGCACAGTAT
GAGTGGCCAGGAGCAGCACCAGCAGCTTGTAATTAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22596.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis