Browse Element(s) Details


Os.22618.1.S1_at

Description gb:AK103642.1
DB_XREF= gi:32988851
TID=Os.22618.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468H06.12 (P0468H06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033134M14, full insert sequence.
FL= gb:AK103642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2377011/11expressed protein
LOC_Os06g048202/11Leucine carboxyl methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23710OsAffx.15583.1.S1_at8/116+13853886..13859640hypothetical protein
LOC_Os06g23710OsAffx.27828.1.S1_at3/116+13853886..13859640hypothetical protein
LOC_Os06g23720NANA6+13862323..13864047hypothetical protein
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22618.1.S1_at--559--7832Chr06:13886209..13886233 (25 bp)
GGTACCTGTCCTTTTATTTCTTATG
LOC_Os06g23770
Os.22618.1.S1_at--431--8533Chr06:13886186..13886210 (25 bp)
TGGACAGATATATTGAGGTGCTTAT
LOC_Os06g23770
Os.22618.1.S1_at--426--6153Chr06:13886172..13886196 (25 bp)
GAGGTGCTTATTACTTTATTCATAC
LOC_Os06g23770
Os.22618.1.S1_at--67--132Chr06:13886155..13886179 (25 bp)
ATTCATACCATTATTCTATAGTTTA
LOC_Os06g23770
Os.22618.1.S1_at--390--292Chr06:13886138..13886162 (25 bp)
ATAGTTTAATGCCTTCTGTTGTCCT
LOC_Os06g23770
Os.22618.1.S1_at--291--10611Chr06:13886125..13886149 (25 bp)
TTCTGTTGTCCTTCTAATTCTGAGT
LOC_Os06g23770
Os.22618.1.S1_at--1127--10571Chr06:13886114..13886138 (25 bp)
TTCTAATTCTGAGTAGAGGATGCCC
LOC_Os06g23770
Os.22618.1.S1_at--580--6172Chr06:13886099..13886123 (25 bp)
GAGGATGCCCTAAACATATGCCACA
LOC_Os06g23770
Os.22618.1.S1_at--64--2553Chr04:15747965..15747989 (25 bp)
AACTCCATTAACCTATATTTATTCA
NONE
Os.22618.1.S1_at--813--7074Chr04:15748151..15748175 (25 bp)
GTAATTCAATCCTCTATTTGCTATG
NONE
Os.22618.1.S1_at--865--3193Chr04:15748157..15748181 (25 bp)
CAATCCTCTATTTGCTATGAGTGGA
NONE
Target Sequence 
GGTACCTGTCCTTTTATTTCTTATGGACAGATATATTGAGGTGCTTATTACTTTATTCATACCATTATTCTATAGTTTAA
TGCCTTCTGTTGTCCTTCTAATTCTGAGTAGAGGATGCCCTAAACATATGCCACAAAAATAACTCCATTAACCTATATTT
ATTCACATTTAGAAAAAGAAAATTAGGAGGGAGGACTAATATTGTNNNNNANNNTNNNNNNNNANTNNNNTTGNNTCNNN
NNATNNNCANTNNANNTNNNNNNNNNCAGCACATCTCAANAAGCTATGTATAAGTTGTAGCAAAAAATTCCATTTGCACA
TCAACAAGAAGGCCTTGNTGTAATTCAATCCTCTATTTGCTATGAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis