Browse Element(s) Details


Os.22618.2.S1_x_at

Description gb:NM_193540.1
DB_XREF= gi:34914163
GEN=P0468H06.12
TID=Os.22618.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468H06.12 (P0468H06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0468H06.12 (P0468H06.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g237702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23710OsAffx.15583.1.S1_at8/116+13853886..13859640hypothetical protein
LOC_Os06g23710OsAffx.27828.1.S1_at3/116+13853886..13859640hypothetical protein
LOC_Os06g23720NANA6+13862323..13864047hypothetical protein
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22618.2.S1_x_at--841--1792Chr06:13888210..13888234 (25 bp)
ACGCGGATCTGGTGGTACGGGACGA
NONE
Os.22618.2.S1_x_at--896--8552Chr06:13888198..13888222 (25 bp)
TGGTACGGGACGACCACGGAGCGGC
NONE
Os.22618.2.S1_x_at--932--8392Chr05:6771695..6771831 (25 bp)
GGCGCGGCGGCGATAGCAGCTCGAC
NONE
Os.22618.2.S1_x_at--184--6491Chr01:21776774..21776798 (25 bp)
GATAGCAGCTCGACGGCGTCGCCCT
NONE
Os.22618.2.S1_x_at--509--1772Chr06:13887987..13888088 (25 bp)
ACCGGATCTCGCCACTGGATCCCGT
NONE
Os.22618.2.S1_x_at--35--6052Chr06:13887961..13887984 (24 bp)
GAGATCTCGCCGTCGGATCCTGCCA
NONE
Os.22618.2.S1_x_at--117--3792Chr06:13887942..13887966 (25 bp)
CTGCCACCGACCTTCTTAAGTGGTG
NONE
Os.22618.2.S1_x_at--332--4232Chr06:13887936..13887960 (25 bp)
CCGACCTTCTTAAGTGGTGGTGGTG
NONE
Os.22618.2.S1_x_at--971--4091Chr01:21776496..21776520 (25 bp)
CGACGGCGATGTGGCTTTACGGCGA
NONE
Os.22618.2.S1_x_at--703--6112Chr06:13887839..13887863 (25 bp)
GAGGGTCGACCCACCGCCTGTTCTT
LOC_Os06g23770
Os.22618.2.S1_x_at--942--4472Chr06:13887824..13887848 (25 bp)
GCCTGTTCTTCAACTGCTTCCGATG
LOC_Os06g23770
Target Sequence 
ACGCGGATCTGGTGGTACGGGACGACCACGGAGCGGCCGGCGAGCTCCAGGCGGCGCGGCGGCGATAGCAGCTCGACGGC
GTCGCCCTCCCTATCCCCCACACCTCCGTCGCCTCTGCCCCCTCACCACCGGGTCACTCCCTCACCACCGGATCTCGCCA
CTGGATCCCGTCGCCGACGGAGATCTCGCCGTCGGATCCTGCCACCGACCTTCTTAAGTGGTGGTGGTGGAGGGGGGGAG
GGTGGATTGGGGCTCGTCGCCTCGAGGAGGCCGACGGCGATGTGGCTTTACGGCGAGGGTCGACCCACCGCCTGTTCTTC
AACTGCTTCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22618.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis