Browse Element(s) Details


Os.22646.1.S1_x_at

Description gb:NM_187488.1
DB_XREF= gi:34902061
TID=Os.22646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1005_B10.28 (OJ1005_B10.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071M09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1625010/11transposon protein, putative, unclassified
LOC_Os02g185901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g387301/11hypothetical protein
LOC_Os10g346501/11retrotransposon protein, putative, unclassified
LOC_Os01g432101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g491001/11retrotransposon protein, putative, unclassified
LOC_Os04g215101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified
LOC_Os03g16290Os.32462.1.S1_a_at10/113+8962056..8963231fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22646.1.S1_x_at--203--4011Chr03:8942305..8942329 (25 bp)
CGTGCGCAGTCGGAGATCGTCCTCG
LOC_Os03g16250
Os.22646.1.S1_x_at--1110--6371Chr03:8942291..8942315 (25 bp)
GATCGTCCTCGGGACGGACGACATT
LOC_Os03g16250
Os.22646.1.S1_x_at--839--4071Chr03:8942165..8942279 (25 bp)
CGACCTCGGCGTGTTCTTATTTGGA
LOC_Os03g16250
Os.22646.1.S1_x_at--358--4291Chr03:8942162..8942276 (25 bp)
CCTCGGCGTGTTCTTATTTGGATAT
LOC_Os03g16250
Os.22646.1.S1_x_at--694--6011NONE
GAGAGGTTTATATGTATGATTTTCA
NONE
Os.22646.1.S1_x_at--1110--6911Chr03:8941628..8941652 (25 bp)
GTATGATTTTCATGTTATCGTTATA
LOC_Os03g16250
Os.22646.1.S1_x_at--209--28742Chr08:5151842..5151866 (25 bp)
AAGTGTGAGACTAATGTTTACTCGA
NONE
Os.22646.1.S1_x_at--219--6833Chr01:8977932..8977956 (25 bp)
GTTTACTCGAGTCATATCTTATTTA
NONE
Os.22646.1.S1_x_at--459--4053Chr01:8977939..8977963 (25 bp)
CGAGTCATATCTTATTTAGTCTAAT
NONE
Os.22646.1.S1_x_at--259--7111Chr03:8940174..8940198 (25 bp)
GTCAGACCGAGCCTGTCAGGGTTAT
LOC_Os03g16250
Os.22646.1.S1_x_at--1089--6636Chr08:15375079..15375098 (20 bp)
GTTGCCTAAATCTCGGCAGAACCCA
NONE
Target Sequence 
CGTGCGCAGTCGGAGATCGTCCTCGGGACGGACGACATTGCCTCCGACGCCGACCTCGGCGTGTTCTTATTTGGATATGA
AAGTAAAAATGATGAGAGGTTTATATGTATGATTTTCATGTTATCGTTATATAAGTGTGAGACTAATGTTTACTCGAGTC
ATATCTTATTTAGTCTAATTTACATTAAGAACAGGGAGATCATGAAGAGCCGCCAGAGCCACAACCGGTCAGACCGAGCC
TGTCAGGGTTATGGATACCACATACCTAATAGTAGTTGCCTAAATCTCGGCAGAACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22646.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis