Browse Element(s) Details


Os.22677.1.S1_a_at

Description gb:AK066876.1
DB_XREF= gi:32976894
TID=Os.22677.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (OSJNBa0050M22.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075D12, full insert sequence.
FL= gb:AK066876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1986011/11myosin, putative, expressed
LOC_Os02g537406/11myosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19810OsAffx.20497.1.S1_at11/1110+9550634..9551206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19820OsAffx.18303.1.S1_at10/1110+9552396..9554233hypothetical protein
LOC_Os10g19830NANA10+9555484..9558788transposon protein, putative, Mariner sub-class, expressed
LOC_Os10g19850OsAffx.30454.1.S1_x_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19850OsAffx.30454.1.S1_at11/1110+9564460..9565919hypothetical protein
LOC_Os10g19860Os.22677.1.S1_a_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.22677.3.S1_x_at11/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860OsAffx.13489.1.S1_at2/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19860Os.7672.1.S1_at1/1110+9575925..9586322myosin, putative, expressed
LOC_Os10g19880Os.23313.3.S1_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880Os.23313.4.S1_x_at11/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19880OsAffx.30595.1.S1_at1/1110+9589513..9600042large secreted protein, putative, expressed
LOC_Os10g19890OsAffx.8261.1.S1_at11/1110+9603207..9606845retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22677.1.S1_a_at--195--6992Chr10:9585541..9585565 (25 bp)
GTACGCCAAATATACAGGATATGCT
LOC_Os10g19860
Os.22677.1.S1_a_at--1025--4392Chr10:9585545..9585569 (25 bp)
GCCAAATATACAGGATATGCTCAAT
LOC_Os10g19860
Os.22677.1.S1_a_at--456--632Chr10:9585561..9585585 (25 bp)
ATGCTCAATGTACTGGGACGACAAA
LOC_Os10g19860
Os.22677.1.S1_a_at--11--4832Chr10:9585563..9585587 (25 bp)
GCTCAATGTACTGGGACGACAAATA
LOC_Os10g19860
Os.22677.1.S1_a_at--400--5792Chr10:9585577..9585601 (25 bp)
GACGACAAATACAATACCCAAGGAA
LOC_Os10g19860
Os.22677.1.S1_a_at--872--3071Chr10:9585589..9585613 (25 bp)
AATACCCAAGGAATATCAAATGAGG
LOC_Os10g19860
Os.22677.1.S1_a_at--333--232Chr10:9586028..9586052 (25 bp)
ATGGTTGGGGTTGCCTTGAAGATTC
LOC_Os10g19860
Os.22677.1.S1_a_at--769--8611Chr10:9586222..9586246 (25 bp)
TGGGTGTCCACCTGTCCTATGTTCA
LOC_Os10g19860
Os.22677.1.S1_a_at--43--7471Chr10:9586225..9586249 (25 bp)
GTGTCCACCTGTCCTATGTTCAGAT
LOC_Os10g19860
Os.22677.1.S1_a_at--720--9211Chr10:9586228..9586252 (25 bp)
TCCACCTGTCCTATGTTCAGATCAT
LOC_Os10g19860
Os.22677.1.S1_a_at--873--3871Chr10:9586233..9586257 (25 bp)
CTGTCCTATGTTCAGATCATCAGAT
LOC_Os10g19860
Target Sequence 
GTACGCCAAATATACAGGATATGCTCAATGTACTGGGACGACAAATACAATACCCAAGGAATATCAAATGAGGTTGTTTC
TGCAATGAGGGAGGAAGTAAACAAAGATACTCAGAATCTCGTATCAAATTCCTTTTTATTAGATGANGANTTANGTATAC
CGTTNTCTACAGAGGATTTGTCAATNGCCATCCCTGCNATAGATTATGNAGATNTAGAACTTCCAGAATCNCTTCATCAC
TATNCATCAGTACAGCTCCTANTCAAGCATCATGATCCACAGCCTGTCTAATAGTATGGTTGGGGTTGCCTTGAAGATTC
GTTTATTTTTNTTCCCAGNTTTTAGTGGNGTTANNTCTTTTGAACTGTTGTATGGTTGTTAGGCTTGTAGTCTTAAGTTT
ATCCGGGGGTGAAAAGGTTGTAACAGAAATGGTAGGATGTCNTTTCAAAGCAACAATTGTTNNTNGGTGAAAATTAAACN
ACCGTGGACCCTGGGTGTCCACCTGTCCTATGTTCAGATCATCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22677.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis