Browse Element(s) Details


Os.22699.1.S1_at

Description gb:AK061723.1
DB_XREF= gi:32971741
TID=Os.22699.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A06, full insert sequence.
FL= gb:AK061723.1 gb:AK064976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6414011/11expressed protein
LOC_Os04g587803/11pentatricopeptide, putative, expressed
LOC_Os07g356802/11Protein kinase domain containing protein, expressed
LOC_Os03g104782/111,4-beta-xylanase, putative, expressed
LOC_Os02g485701/11POT family protein, expressed
LOC_Os04g359301/11F-box domain containing protein
LOC_Os09g218001/11F-box domain containing protein
LOC_Os03g524601/11Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64080Os.9258.1.S1_at11/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64080OsAffx.8397.1.S1_at1/113+36146529..36161887retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g64100Os.57012.1.S1_at10/113+36163263..36164076expressed protein
LOC_Os03g64110Os.8431.1.S1_at11/113+36167701..36171908WD domains, G-beta repeats containing protein, putative, expressed
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0016020cellular_componentmembrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005215molecular_functiontransporter activity
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
GO:0015197molecular_functionpeptide transporter activity
GO:0016301molecular_functionkinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22699.1.S1_at--635--2951Chr03:36182616..36182639 (24 bp)
AAGGCGCTCAGGTTGGCACTGGAAA
LOC_Os03g64140
Os.22699.1.S1_at--1138--5091Chr03:36182601..36182625 (25 bp)
GCACTGGAAAACAAAGGCTGGGCTT
LOC_Os03g64140
Os.22699.1.S1_at--180--1731Chr03:36182568..36182592 (25 bp)
ACCATCTGAACCTAACCTCAAGGAA
LOC_Os03g64140
Os.22699.1.S1_at--831--9731Chr03:36182551..36182575 (25 bp)
TCAAGGAAGCCAACCCCTCGAGTCT
LOC_Os03g64140
Os.22699.1.S1_at--963--2591Chr03:36182540..36182564 (25 bp)
AACCCCTCGAGTCTGTACTGGAGTG
LOC_Os03g64140
Os.22699.1.S1_at--70--9391Chr03:36182534..36182558 (25 bp)
TCGAGTCTGTACTGGAGTGTGGATT
LOC_Os03g64140
Os.22699.1.S1_at--1032--98960Chr11:27330462..27330486 (25 bp)
TACTAGTCCACCAAAATTCATGTTC
NONE
Os.22699.1.S1_at--833--105361Chr12:4991060..4991084 (25 bp)
TTCATGTTCAAATTCGATCTACACA
NONE
Os.22699.1.S1_at--686--40332Chr12:26869120..26869143 (24 bp)
CGTTTAGATGGTTTTTGAGCAAACA
NONE
Os.22699.1.S1_at--463--9851Chr03:36182121..36182145 (25 bp)
TACAGACTGACCGACCGATTGGCTG
LOC_Os03g64140
Os.22699.1.S1_at--601--8911Chr03:36182114..36182138 (25 bp)
TGACCGACCGATTGGCTGGTACAGG
LOC_Os03g64140
Target Sequence 
AAGGCGCTCAGGTTGGCACTGGAAAACAAAGGCTGGGCTTCAGAAAGCACCATCTGAACCTAACCTCAAGGAAGCCAACC
CCTCGAGTCTGTACTGGAGTGTGGATTCTAATCCCTCGAGGGNATATCCCCTCGTATATNTTTTTCTTCCAAATTCGATG
CAAATAGTTGTGAAAAATTCTNAAAAAAATTGANAATGTAGAGTATAATNATACCTACTAGTCCACCAAAATTCATGTTC
AAATTCGATCTACACATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGCTANTATTCATACGCTGAATTTGT
CTTTTTTATATCTCGACNTGTGAGTTGAGTTTGNACTTAAGATTTTGTGGAGTTGTATATATGTGTTGTATGAATGTTGT
CAAATTTTTCCAGANTTTTTNATAACCGTTTAGATGGTTTTTGAGCAAACAAGGAAACATCCCNTCNAGGGATTANAATA
GTTTNNNTCCNTNCTGTNCTNTACAGACTGACCGACCGATTGGCTGGTACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis