Browse Element(s) Details


Os.22703.1.S1_at

Description gb:AK066033.1
DB_XREF= gi:32976051
TID=Os.22703.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043D16, full insert sequence.
FL= gb:AK066033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22703.1.S1_at--54--3071Chr07:25536948..25536972 (25 bp)
CTTATCCAAACACCCCTTAATTGTG
LOC_Os07g42650
Os.22703.1.S1_at--103--10331Chr07:25536979..25537003 (25 bp)
TTTCTTCATACTTTGTGACTTCGTT
LOC_Os07g42650
Os.22703.1.S1_at--578--8511Chr07:25536992..25537016 (25 bp)
TGTGACTTCGTTTCTAACCTTTTGA
LOC_Os07g42650
Os.22703.1.S1_at--389--3731Chr07:25537005..25537029 (25 bp)
CTAACCTTTTGACATTGCATGGCCT
LOC_Os07g42650
Os.22703.1.S1_at--1136--6451Chr07:25537138..25537162 (25 bp)
GATAATGCCCATCCACGAAGTGTTC
LOC_Os07g42650
Os.22703.1.S1_at--427--3651Chr07:25537162..25537186 (25 bp)
CTTCAAGCCTGACTAACAACACTCA
LOC_Os07g42650
Os.22703.1.S1_at--793--3071Chr07:25537196..25537220 (25 bp)
AATCACCATGACATCTAGATCGTAG
LOC_Os07g42650
Os.22703.1.S1_at--999--1331Chr07:25537299..25537323 (25 bp)
AGAGTGTAGCTTTTCCAGCTCTTGA
LOC_Os07g42650
Os.22703.1.S1_at--827--6111Chr07:25537384..25537408 (25 bp)
GAGTGCAACCAGCATAAACCAGCTT
LOC_Os07g42650
Os.22703.1.S1_at--647--10851Chr07:25537411..25537435 (25 bp)
TTGGTGCACCCGACTGTGAAAGTGT
LOC_Os07g42650
Os.22703.1.S1_at--102--1311Chr07:25537458..25537479 (22 bp)
AGATGTGCGACCGTGATTGCCAAAA
LOC_Os07g42650
Target Sequence 
CTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGC
CTNGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGG
AAGCGGATGCTAAAGGTCACGAGCCNCAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCAN
NNNGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAANTCACTTNGTGCAAGCTTGTAAGGTTGGTTAGACTT
AAAACTATCCNCNTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCA
AAGTGTTCTGTTTGGGTCNAGAAAAGNTTTGNTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGA
CTGTGAAAGTGTGACTTAGCTNCAGAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis