Browse Element(s) Details


Os.22767.1.S1_at

Description gb:AK065807.1
DB_XREF= gi:32975825
TID=Os.22767.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037F14, full insert sequence.
FL= gb:AK065807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2492410/11Sugar carrier protein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24890NANA9+14863763..14864002hypothetical protein
LOC_Os09g24900Os.23266.1.S1_at11/119+14866405..14869920Ankyrin protein kinase, putative, expressed
LOC_Os09g24910Os.5137.1.S1_at11/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24910OsAffx.22606.1.S1_at1/119+14869985..14877174Phosphofructokinase family protein, expressed
LOC_Os09g24924Os.22767.1.S1_at10/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.30009.1.S1_at8/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.6233.1.S1_at3/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924Os.47306.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24924OsAffx.9066.1.S1_x_at1/119+14886139..14892285Sugar carrier protein A, putative, expressed
LOC_Os09g24940OsAffx.17882.1.S1_at11/119+14894144..14894926hypothetical protein
LOC_Os09g24954OsAffx.17883.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954Os.22673.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24954OsAffx.17884.1.S1_s_at11/119+14895178..14900414Double-stranded RNA binding motif family protein, expressed
LOC_Os09g24970Os.14393.1.S1_x_at11/119+14916135..14917910expressed protein
LOC_Os09g24970Os.14393.2.S1_at9/119+14916135..14917910expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22767.1.S1_at--1039--9091Chr09:14891810..14891834 (25 bp)
TGCTCTGCGCGCTCAAGTTCGGCAT
LOC_Os09g24924
Os.22767.1.S1_at--164--10651Chr09:14891845..14891869 (25 bp)
TTCGCCGGGTGGATCACCGTCATGA
LOC_Os09g24924
Os.22767.1.S1_at--761--7731Chr09:14891852..14891876 (25 bp)
GGTGGATCACCGTCATGACCGTCTT
LOC_Os09g24924
Os.22767.1.S1_at--163--7131Chr09:14891863..14891887 (25 bp)
GTCATGACCGTCTTCGTCCACGTCT
LOC_Os09g24924
Os.22767.1.S1_at--379--6191Chr09:14891983..14892007 (25 bp)
GAGGACGGCGACAGTCATCACAAGT
LOC_Os09g24924
Os.22767.1.S1_at--370--1951Chr09:14891987..14892011 (25 bp)
ACGGCGACAGTCATCACAAGTGAAA
LOC_Os09g24924
Os.22767.1.S1_at--792--2811Chr09:14892080..14892104 (25 bp)
AAGATTGATCATGTGCGGTAATGCA
LOC_Os09g24924
Os.22767.1.S1_at--1053--6431Chr09:14892134..14892158 (25 bp)
GATCATGATGTCTGTTTGTCGTGGC
LOC_Os09g24924
Os.22767.1.S1_at--226--331Chr09:14892191..14892215 (25 bp)
ATACTACTCGATTATTAATTGTCTG
LOC_Os09g24924
Os.22767.1.S1_at--660--9731Chr09:14892206..14892230 (25 bp)
TAATTGTCTGAATCCTCGTGAAAAT
LOC_Os09g24924
Os.22767.1.S1_at--456--3111NONE
AATTTTACCAAATTTTAGCATGGCA
NONE
Target Sequence 
TGCTCTGCGCGCTCAAGTTCGGCATCTTCCTCTTCTTCGCCGGGTGGATCACCGTCATGACCGTCTTCGTCCACGTCTTC
CTGCCGGAGACCAAGGGCGTGCCCATCGAGGAGATGGTGCTCCTATGGAGGAAGCACTGGTTCTGGAAGAAGGTCATGCC
CGACCTGCCGCTCGAGGACGGCGACAGTCATCACAAGTGAAAGAAATGTACTCTGAGATAGTATATGGGGGTTACAGTAG
ATGAGACANTGACATGTAGGATGAGGAGATTAAGATTGATCATGTGCGGTAATGCANTTCTGTGTGTATGTTAATTGAAG
TTCATGGATCATGATGTCTGTTTGTCGTGGCNAGAGAAGAGAAATATTGGAAACACNAAATTTTATACTACTCGATTATT
AATTGTCTGAATCCTCGTGAAAATATTGGGGNTTGTTCAGATTGTAGCAAAANNAAATTTTACCAAATTTTAGCATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis