Browse Element(s) Details


Os.22785.1.S1_a_at

Description gb:AK070401.1
DB_XREF= gi:32980425
TID=Os.22785.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative tubby-like protein (P0485G01.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048A08, full insert sequence.
FL= gb:AK099104.1 gb:AK070401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4837011/11Tub family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48320Os.6377.1.S1_at10/111+28017443..28018916expressed protein
LOC_Os01g48330Os.15379.1.S1_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.2.S1_x_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330Os.15379.1.S2_a_at11/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48330OsAffx.12843.1.S1_at1/111+28019405..28029179Protein kinase domain containing protein, expressed
LOC_Os01g48340OsAffx.23712.1.S1_at11/111+28031273..28031764hypothetical protein
LOC_Os01g48349NANA1+28038431..28039484NA
LOC_Os01g48360OsAffx.21509.1.S1_at11/111+28041472..28042089expressed protein
LOC_Os01g48370Os.22785.1.S1_a_at11/111+28043036..28048065Tub family protein, expressed
LOC_Os01g48380Os.17708.1.S1_at11/111+28052430..28059329pentatricopeptide, putative, expressed
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22785.1.S1_a_at--572--2611Chr01:28043647..28043671 (25 bp)
AACCCACAGGGAACACAGTTCTAAG
LOC_Os01g48370
Os.22785.1.S1_a_at--700--10731Chr01:28043579..28043603 (25 bp)
TTGAACTTCCATGGGCGGGTGACAG
LOC_Os01g48370
Os.22785.1.S1_a_at--924--8351Chr01:28043566..28043590 (25 bp)
GGCGGGTGACAGTTGCATCTGTCAA
LOC_Os01g48370
Os.22785.1.S1_a_at--133--211Chr01:28043539..28043563 (25 bp)
ATTTCCAACTAGTTGCTGCTGCTGA
LOC_Os01g48370
Os.22785.1.S1_a_at--742--4771Chr01:28043525..28043549 (25 bp)
GCTGCTGCTGATCCCAATGATCCTG
LOC_Os01g48370
Os.22785.1.S1_a_at--337--2911Chr01:28043492..28043516 (25 bp)
AAGGATGAGGAAACAGTTCTGTTGC
LOC_Os01g48370
Os.22785.1.S1_a_at--966--2891Chr01:28043459..28043483 (25 bp)
AAGGTCGATGACAATATCTTCACGA
LOC_Os01g48370
Os.22785.1.S1_a_at--1027--431Chr01:28043444..28043468 (25 bp)
ATCTTCACGATGGATTACCGGCAGC
LOC_Os01g48370
Os.22785.1.S1_a_at--279--151Chr01:28043431..28043455 (25 bp)
ATTACCGGCAGCCACTCTCAGCGTT
LOC_Os01g48370
Os.22785.1.S1_a_at--505--4351Chr01:28043420..28043444 (25 bp)
CCACTCTCAGCGTTTCAAGCCTTTG
LOC_Os01g48370
Os.22785.1.S1_a_at--1012--1511Chr01:28043384..28043408 (25 bp)
AGCAGCTTTGGTACCAAGCTAGCTT
LOC_Os01g48370
Target Sequence 
AACCCACAGGGAACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCAT
GGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGA
TGAGGAAACAGTTCTGTTGCAGTTTGGTAAGGTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGT
TTCAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22785.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis