Browse Element(s) Details


Os.22793.1.S1_at

Description gb:AK063374.1
DB_XREF= gi:32973392
TID=Os.22793.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E08, full insert sequence.
FL= gb:AK063374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0794010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07910Os.26444.1.S1_at11/1111+4072807..4079376Endomembrane protein 70 containing protein, expressed
LOC_Os11g07916Os.7859.1.S1_at11/1111+4087072..4089566nitrogen fixation protein, putative, expressed
LOC_Os11g07922Os.52255.1.S1_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922Os.52255.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07922OsAffx.18738.1.S1_x_at11/1111+4090467..4093063oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07930Os.25496.1.S1_at11/1111+4093522..4097409oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g07940Os.22793.1.S1_at10/1111+4098869..4106094expressed protein
LOC_Os11g07950Os.49489.1.S1_at10/1111+4118397..4119430expressed protein
LOC_Os11g07960Os.10765.1.S1_at11/1111+4124435..4126472Transferase family protein, expressed
LOC_Os11g07970Os.26777.1.S1_at10/1111+4130244..4136381F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22793.1.S1_at--157--2971Chr11:4105346..4105370 (25 bp)
AATGGCTATGGTCTTTGCTCACTTA
LOC_Os11g07940
Os.22793.1.S1_at--636--8091Chr11:4105377..4105401 (25 bp)
GGACCATTTTGGACTTCTATCGTAG
LOC_Os11g07940
Os.22793.1.S1_at--165--8131Chr11:4105387..4105411 (25 bp)
GGACTTCTATCGTAGCAAGCTTGAC
LOC_Os11g07940
Os.22793.1.S1_at--122--9791Chr11:4105459..4105483 (25 bp)
TAAGACTTCTACCATGGAGTCCATG
LOC_Os11g07940
Os.22793.1.S1_at--1036--10131Chr11:4105500..4105524 (25 bp)
TATGCTACTGTCATTCTTCTTGCAA
LOC_Os11g07940
Os.22793.1.S1_at--560--5191Chr11:4105521..4105545 (25 bp)
GCAATATTCCTGATCGTGGTCCTTA
LOC_Os11g07940
Os.22793.1.S1_at--303--8611Chr11:4105537..4105561 (25 bp)
TGGTCCTTACCATGCTGATTGTTTG
LOC_Os11g07940
Os.22793.1.S1_at--344--2331NONE
AAAGTTCACGCGTTGGATTGCAAGT
NONE
Os.22793.1.S1_at--289--6531Chr11:4105684..4105708 (25 bp)
GTTACTTTTCATGTTGTCCAGGGCC
LOC_Os11g07940
Os.22793.1.S1_at--415--7271Chr11:4105699..4105723 (25 bp)
GTCCAGGGCCTGAATGATAGATGTC
LOC_Os11g07940
Os.22793.1.S1_at--172--6611Chr11:4105886..4105910 (25 bp)
GATTGTGTCACATTTGTTGTACAGA
LOC_Os11g07940
Target Sequence 
AATGGCTATGGTCTTTGCTCACTTAGCAAGTGGACCATTTTGGACTTCTATCGTAGCAAGCTTGACATTATACTTTGTCA
TTTATAGCATCACATTAGTGTATTATGCATTCATAAGACTTCTACCATGGAGTCCATGGACAAGATTGCAGTTTTATGCT
ACTGTCATTCTTCTTGCAATATTCCTGATCGTGGTCCTTACCATGCTGATTGTTTGGGGGAGTTTTGTTAAAAAACCAAA
GTTCACGCGTTGGATTGCAAGTTACTTTTCATGTTGTCCAGGGCCTGAATGATAGATGTCTATTACAGGAGGTAAACAAG
TGACTACTCTGGTNCCTTGCAAAGTTTATCATTGAAGACAAGTTGCCAATGAAGATTCAGAAGCTTGATTGTGTCACATT
TGTTGTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis