Browse Element(s) Details


Os.22796.1.S1_at

Description gb:AK058659.1
DB_XREF= gi:32968677
TID=Os.22796.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F11, full insert sequence.
FL= gb:AK058659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47120Os.14080.1.S1_s_at11/113+26600793..26607017CBS domain-containing protein, putative, expressed
LOC_Os03g47130Os.41695.15.S1_s_at11/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.3.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.4.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.2.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47130Os.41695.5.S1_x_at5/113+26617975..26623851transposon protein, putative, Mutator sub-class
LOC_Os03g47140Os.22796.1.S1_at11/113+26628429..26631307expressed protein
LOC_Os03g47149NANA3+26637611..26639162hypothetical protein
LOC_Os03g47160OsAffx.3538.1.S1_at4/113+26640448..26640906hypothetical protein
LOC_Os03g47169Os.51572.1.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_x_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47169OsAffx.25595.2.S1_at11/113+26643153..26644461hypothetical protein
LOC_Os03g47178NANA3+26644835..26645222hypothetical protein
LOC_Os03g47190Os.54665.1.S1_at11/113+26655415..26657212expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22796.1.S1_at--217--5631Chr03:26630826..26630850 (25 bp)
GACAGTTCCATCAACTTTCTATTCC
LOC_Os03g47140
Os.22796.1.S1_at--147--7111Chr03:26630869..26630893 (25 bp)
GTCAGCTGCCATGCACCTAATATGG
LOC_Os03g47140
Os.22796.1.S1_at--655--8051Chr03:26630928..26630952 (25 bp)
GGAGATGCCTCAAGGTGGACCTCTA
LOC_Os03g47140
Os.22796.1.S1_at--1081--8091Chr03:26630944..26630968 (25 bp)
GGACCTCTAGGTGAGATCTTGACAA
LOC_Os03g47140
Os.22796.1.S1_at--40--2951Chr03:26631009..26631033 (25 bp)
AAGGCCATATGGTTGGTTACTGAAC
LOC_Os03g47140
Os.22796.1.S1_at--798--6771Chr03:26631024..26631048 (25 bp)
GTTACTGAACCTCGAGGATCATGCA
LOC_Os03g47140
Os.22796.1.S1_at--680--7211Chr03:26631077..26631101 (25 bp)
GTCGTTAATGAGCTCACCATGGGAT
LOC_Os03g47140
Os.22796.1.S1_at--200--291Chr03:26631100..26631124 (25 bp)
ATAGCTTTAGTATTGGCGTTACCCA
LOC_Os03g47140
Os.22796.1.S1_at--941--9951Chr03:26631119..26631143 (25 bp)
TACCCATGCATGTTATTCCCTTCTT
LOC_Os03g47140
Os.22796.1.S1_at--266--10611Chr03:26631143..26631167 (25 bp)
TTCTGTTCTCAAGCTTCTGCAATGT
LOC_Os03g47140
Os.22796.1.S1_at--222--311Chr03:26631169..26631193 (25 bp)
ATACCAGCTAATTGCGATTTTCAGT
LOC_Os03g47140
Target Sequence 
GACAGTTCCATCAACTTTCTATTCCTCGCCAGAGGACCCACGCGTCAGCTGCCATGCACCTAATATGGCACAAATGCAAG
AGGATAGCATCTCAAGTTCTTGGGAGATGCCTCAAGGTGGACCTCTAGGTGAGATCTTGACAAACTCCAAAAATCCTGAC
GATTCAATCATGAAACCAGAAGCAAGGCCATATGGTTGGTTACTGAACCTCGAGGATCATGCAATGTGAATCTTCAGGAA
ATGGAGATCAAGTCGTTAATGAGCTCACCATGGGATAGCTTTAGTATTGGCGTTACCCATGCATGTTATTCCCTTCTTTC
TGTTCTCAAGCTTCTGCAATGTAATACCAGCTAATTGCGATTTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis