Browse Element(s) Details


Os.22843.1.S1_at

Description gb:AK058366.1
DB_XREF= gi:32968384
TID=Os.22843.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.22843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F12, full insert sequence.
FL= gb:AK070081.1 gb:AK058366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0571011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05680NANA5+2803342..28049521-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0005509molecular_functioncalcium ion binding
GO:0030359molecular_functionprotein phosphatase type 2B regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22843.1.S1_at--533--9831Chr05:2829071..2829095 (25 bp)
TAAAGCCGGCAGATCCTCTCAGGAT
LOC_Os05g05710
Os.22843.1.S1_at--188--3991Chr05:2829129..2829153 (25 bp)
CGGGACTATTGCCAGCATGCTTATA
LOC_Os05g05710
Os.22843.1.S1_at--595--631Chr05:2829145..2829169 (25 bp)
ATGCTTATAGATGTGCGCGGCTTCT
LOC_Os05g05710
Os.22843.1.S1_at--897--8191Chr05:2829219..2829243 (25 bp)
GGAAGAGGCCTGAGTTCTCCAGCTG
LOC_Os05g05710
Os.22843.1.S1_at--98--7051Chr05:2829260..2829284 (25 bp)
GTAAACTCTCAACCGCAAGGCACTG
LOC_Os05g05710
Os.22843.1.S1_at--179--3171Chr05:2829287..2829311 (25 bp)
AATTGCTGGTATCTCGCAACCGCAA
LOC_Os05g05710
Os.22843.1.S1_at--972--1911Chr05:2829315..2829339 (25 bp)
ACGGGCAATTGCTTGTACCACTGTA
LOC_Os05g05710
Os.22843.1.S1_at--353--2831Chr05:2829376..2829400 (25 bp)
AAGTTCAACCTGTTCGCTGGGAGAC
LOC_Os05g05710
Os.22843.1.S1_at--75--7451Chr05:2829478..2829502 (25 bp)
GTGTCGACCAGATGTATTACCGCAG
LOC_Os05g05710
Os.22843.1.S1_at--394--2931Chr05:2829521..2829545 (25 bp)
AAGGAAAGCCTCAGCCTGTGGAATT
LOC_Os05g05710
Os.22843.1.S1_at--148--211Chr05:2829543..2829567 (25 bp)
ATTTGTACGTCTATGCGACACCACG
LOC_Os05g05710
Target Sequence 
TAAAGCCGGCAGATCCTCTCAGGATCGCACTAACAGATCTTCTATCTTGCAAGCAAGGCGGGACTATTGCCAGCATGCTT
ATAGATGTGCGCGGCTTCTGGGCCCACGACAACAGAGAGAACCTCCTCCAGGAAGAGGAAGAGCAAGTGGAAGAGGCCTG
AGTTCTCCAGCTGCCGTGCAACCAACCTGGTAAACTCTCAACCGCAAGGCACTGGCAATTGCTGGTATCTCGCAACCGCA
AGGCACGGGCAATTGCTTGTACCACTGTATGTGTGCCATTGTAGCTTACATAGTGTATTAGAATCAAGTTCAACCTGTTC
GCTGGGAGACTTGTTGTAACCTGTAAGTGTTCCATTTGTGTAACCGGAGTGAAATCTGACATATTTTGAGTTGAACATGG
TTTTGTCGTGTCGACCAGATGTATTACCGCAGGGCTTGGTTGGATGCAGAAAGGAAAGCCTCAGCCTGTGGAATTTGTAC
GTCTATGCGACACCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis