Browse Element(s) Details


Os.22908.1.S1_at

Description gb:AK070133.1
DB_XREF= gi:32980157
TID=Os.22908.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046O16, full insert sequence.
FL= gb:AK070133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5040011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50370Os.21040.1.S1_at11/116+30491807..30495151RING-H2 finger protein ATL5P, putative, expressed
LOC_Os06g50380Os.8512.1.S1_at11/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50380Os.4654.1.S1_at1/116+30495475..30500197protein phosphatase 2C homolog, putative, expressed
LOC_Os06g50390Os.27255.2.S1_x_at11/116+30508420..30511305Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g50400Os.22908.1.S1_at11/116+30519197..30520347Alpha-expansin 11 precursor, putative, expressed
LOC_Os06g50410NANA6+30520810..30522036hypothetical protein
LOC_Os06g50420OsAffx.16008.1.S1_at11/116+30527098..30527733Plastocyanin-like domain containing protein
LOC_Os06g50430OsAffx.16009.1.S1_at11/116+30528301..30529521hypothetical protein
LOC_Os06g50440OsAffx.16010.1.S1_at11/116+30536134..30537527hypothetical protein
LOC_Os06g50450OsAffx.28200.1.S1_at9/116+30541969..30549641expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22908.1.S1_at--7--2571Chr06:30519997..30520021 (25 bp)
AACTGGCAGTCGCTGGCGTACCTCG
LOC_Os06g50400
Os.22908.1.S1_at--1106--7191Chr06:30520095..30520119 (25 bp)
GTCGTGGAGGTTCGGCCAGACGTTC
LOC_Os06g50400
Os.22908.1.S1_at--1119--5931Chr06:30520122..30520146 (25 bp)
GAGCACCCAGCAGTTCATGTAGCTA
LOC_Os06g50400
Os.22908.1.S1_at--149--1231Chr06:30520133..30520157 (25 bp)
AGTTCATGTAGCTAGTCTCACTCTC
LOC_Os06g50400
Os.22908.1.S1_at--1021--8731Chr06:30520139..30520163 (25 bp)
TGTAGCTAGTCTCACTCTCGCTCGG
LOC_Os06g50400
Os.22908.1.S1_at--1136--6811Chr06:30520226..30520250 (25 bp)
GTTTAATTAGCAGCCCGCCAACGAT
LOC_Os06g50400
Os.22908.1.S1_at--769--4531Chr06:30520238..30520262 (25 bp)
GCCCGCCAACGATTTGTGCTATGTA
LOC_Os06g50400
Os.22908.1.S1_at--730--8651Chr06:30520285..30520309 (25 bp)
TGTGGTGTATTGAGAAGACTTGTCC
LOC_Os06g50400
Os.22908.1.S1_at--608--5351Chr06:30520298..30520322 (25 bp)
GAAGACTTGTCCACGTATCAATCTA
LOC_Os06g50400
Os.22908.1.S1_at--762--7271Chr06:30520306..30520330 (25 bp)
GTCCACGTATCAATCTAGCACAAAT
LOC_Os06g50400
Os.22908.1.S1_at--100--3071Chr06:30520317..30520341 (25 bp)
AATCTAGCACAAATTGCTTTGCAAA
LOC_Os06g50400
Target Sequence 
AACTGGCAGTCGCTGGCGTACCTCGACGGGCAGGGCCTCTCGTTCCGGGTCACCGCCACCGACGGCCAGACCATCGTCTT
CGCCGGCGTCGTGCCGCCGTCGTGGAGGTTCGGCCAGACGTTCGCGAGCACCCAGCAGTTCATGTAGCTAGTCTCACTCT
CGCTCGGNTTCCCTTTGNTTGGCACTTGGCAGTGGCGTTGTTTGCTATACTTTGCTCTCNTCTGTNGGNGTTTAATTAGC
AGCCCGCCAACGATTTGTGCTATGTAATCGNGTTAATTTGACAGTTTTTGTGGTGTATTGAGAAGACTTGTCCACGTATC
AATCTAGCACAAATTGCTTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis