Browse Element(s) Details


Os.22924.1.S1_at

Description gb:AK073603.1
DB_XREF= gi:32983626
TID=Os.22924.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087M10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052N01, full insert sequence.
FL= gb:AK073603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4000010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39920NANA3+22141835..22147797retrotransposon protein, putative, unclassified
LOC_Os03g39930Os.28943.1.S1_x_at11/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39930Os.28943.1.S1_at9/113+22148304..22150264retrotransposon protein, putative, unclassified, expressed
LOC_Os03g39940Os.47130.4.A1_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39940Os.47130.4.A1_x_at9/113+22152522..22154748retrotransposon protein, putative, unclassified
LOC_Os03g39950OsAffx.22690.1.S1_at10/113+22158332..22158834hypothetical protein
LOC_Os03g39960Os.32194.2.S1_x_at11/113+22158657..22161827expressed protein
LOC_Os03g39960Os.32194.1.S1_at11/113+22158657..22161827expressed protein
LOC_Os03g39970OsAffx.22691.1.S1_at10/113+22165511..22167507hypothetical protein
LOC_Os03g39980OsAffx.25443.1.S1_at11/113+22168202..22169035expressed protein
LOC_Os03g40000Os.22924.1.S1_at10/113+22170865..22172779expressed protein
LOC_Os03g40010Os.11763.1.S1_at10/113+22173892..22181813expressed protein
LOC_Os03g40014NANA3+22185106..22186086NA
LOC_Os03g40020Os.45095.1.S1_at11/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40020Os.53366.1.S1_x_at4/113+22187895..22193521DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g40030OsAffx.22692.1.S1_at11/113+22194083..22194613hypothetical protein
LOC_Os03g40030OsAffx.22692.1.S1_x_at11/113+22194083..22194613hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22924.1.S1_at--682--4991Chr03:22171275..22171299 (25 bp)
GCAGACGGGCAGTTGGGCCTCCCCA
LOC_Os03g40000
Os.22924.1.S1_at--806--1391Chr03:22171273..22171297 (25 bp)
AGACGGGCAGTTGGGCCTCCCCATG
LOC_Os03g40000
Os.22924.1.S1_at--584--8131Chr03:22171074..22171098 (25 bp)
GGACAGTCTGACAGATGGGCCCCAT
LOC_Os03g40000
Os.22924.1.S1_at--118--2111Chr03:22171072..22171096 (25 bp)
ACAGTCTGACAGATGGGCCCCATGT
LOC_Os03g40000
Os.22924.1.S1_at--617--1151Chr03:22171070..22171094 (25 bp)
AGTCTGACAGATGGGCCCCATGTGG
LOC_Os03g40000
Os.22924.1.S1_at--289--4411Chr03:22171026..22171050 (25 bp)
GCCACGGCGGACAAAACCAGGGACA
LOC_Os03g40000
Os.22924.1.S1_at--65--5631Chr03:22171017..22171041 (25 bp)
GACAAAACCAGGGACAAAATCACCG
LOC_Os03g40000
Os.22924.1.S1_at--290--6771Chr03:22170889..22170913 (25 bp)
GTGTACTTTTTTCTTCCATAAATAG
LOC_Os03g40000
Os.22924.1.S1_at--778--8731Chr03:22170888..22170912 (25 bp)
TGTACTTTTTTCTTCCATAAATAGA
LOC_Os03g40000
Os.22924.1.S1_at--260--2231Chr03:22170870..22170894 (25 bp)
AAATAGATTTCCACTATTAGTGCCA
LOC_Os03g40000
Os.22924.1.S1_at--392--6531Chr03:22170865..22170889 (25 bp)
GATTTCCACTATTAGTGCCACTGCC
NONE
Target Sequence 
GCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGCTCCCACCACCGCCGCCATCGGCTGCCGCA
CCTCCTCTCCTGCCTCGCCCCGCCGGCCTCCTCCCCACCTGCCGCTGCCNNNNNNGNNNNANGTGAAGAGTGAGAGAGAG
GAGGAGGTGAGAAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGGTCCCACGCT
GACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCTAAAATGAACGGTTTTGTAAGTTGAGGGAT
GTCCTATATCTGATTTTGTGGTTGGAGGATGATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCT
TCCATAAATAGATTTCCACTATTAGTGCCACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis