Browse Element(s) Details


Os.2296.1.S1_at

Description gb:AK069080.1
DB_XREF= gi:32979104
TID=Os.2296.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004I08, full insert sequence.
FL= gb:AK069080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0807211/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08040OsAffx.22848.3.S1_x_at3/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08040OsAffx.22848.4.S1_x_at2/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08040OsAffx.22848.4.S1_at2/119+4148189..4151622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08050NANA9+4152332..4153255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08060NANA9+4160660..4161648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08072OsAffx.6200.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072Os.2296.1.S1_at11/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_x_at7/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08072OsAffx.29757.2.S1_at4/119+4164397..4169977Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08084NANA9+4171824..4172263NA
LOC_Os09g08100OsAffx.6201.1.S1_at11/119+4174711..4175073hypothetical protein
LOC_Os09g08110OsAffx.17599.1.S1_at11/119+4185360..4185842hypothetical protein
LOC_Os09g08120OsAffx.29757.2.S1_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.2.S1_x_at10/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_x_at8/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.1.S1_x_at7/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.4.S1_x_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os09g08120OsAffx.29757.3.S1_at4/119+4189886..4197627Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2296.1.S1_at--179--4691Chr09:4169339..4169363 (25 bp)
GCGGATTCGTGGACATGGACATCGA
LOC_Os09g08072
Os.2296.1.S1_at--158--8131Chr09:4169355..4169379 (25 bp)
GGACATCGACGATCACAAAACCATA
LOC_Os09g08072
Os.2296.1.S1_at--771--9331Chr09:4169380..4169494 (25 bp)
TCGCTGAGAACGTTGATTGACCATT
LOC_Os09g08072
Os.2296.1.S1_at--289--1871Chr09:4169722..4169746 (25 bp)
ACGACGCAGTGATCTGAGGCCTGAA
LOC_Os09g08072
Os.2296.1.S1_at--686--5092Chr09:4169758..4169782 (25 bp)
GCACTGGCACAGTTGGTTCGATAGT
LOC_Os09g08072
Os.2296.1.S1_at--187--1211Chr09:4169780..4169804 (25 bp)
AGTTTGATGGCATCGTGCAGCCGAT
LOC_Os09g08072
Os.2296.1.S1_at--431--8672Chr09:4197708..4197732 (25 bp)
TGTGGTGATTTGTTCGATTGTTGTG
NONE
Os.2296.1.S1_at--745--3472Chr09:4197735..4197759 (25 bp)
CAGGGTGTATGATCTGTGACAGAAA
NONE
Os.2296.1.S1_at--683--3571Chr09:4169881..4169905 (25 bp)
CATTCGATAGTATACGTCACGTGCT
LOC_Os09g08072
Os.2296.1.S1_at--43--7112Chr09:4169896..4169920 (25 bp)
GTCACGTGCTTTATATGTTTTGCTC
LOC_Os09g08072
Os.2296.1.S1_at--76--3612Chr09:4169920..4169944 (25 bp)
CTTTTGTTATAGTACGTATTCCCTG
LOC_Os09g08072
Target Sequence 
GCGGATTCGTGGACATGGACATCGACGATCACAAAACCATATCGCTGAGAACGTTGATTGACCATTCGGTGGTGGAGAGC
TTCGGCGGCGGCGGGCGGGCGTGCATCACGGCGCGGGTTTACCCGGAGCACGTGGCGACGAGCAGCAGCCATTTGTACGT
GTTCAACAACGGGAGCGACGCCGTTAAGGTGGCCAAGCTGGAGGCGTGGGACCTGGCGACGGCGACCGTCAACGTTGTTG
TTGGAGACCACCACGGCCTTGTTGCGCCGGCGTTGGAGTTGGAGCCGACACGCACGACGCAGTGATCTGAGGCCTGAAGC
GGCTGGCCGGCACTGGCACAGTTGGTTCGATAGTTTGATGGCATCGTGCAGCCGATTGGTTGTGTGGTGATTTGTTCGAT
TGTTGTGAACAGGGTGTATGATCTGTGACAGAAAGAAGAGCACAAAAGAAATCATTCGATAGTATACGTCACGTGCTTTA
TATGTTTTGCTCTTTTGTTATAGTACGTATTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis