Browse Element(s) Details


Os.23021.1.S1_at

Description gb:AK109007.1
DB_XREF= gi:32994216
TID=Os.23021.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H05, full insert sequence.
FL= gb:AK109007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g624801/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g091101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein
LOC_Os03g62480Os.23021.1.S1_at1/113+35319484..35320914UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g62490Os.10849.1.S1_at11/113+35321679..35324125Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os03g62500Os.18526.1.S1_at11/113+35324819..35330993Shaggy-related protein kinase kappa, putative, expressed
LOC_Os03g62510Os.22483.1.A1_s_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62510Os.22483.1.A1_at11/113+35331940..35337050FAD dependent oxidoreductase family protein, expressed
LOC_Os03g62516OsAffx.3676.1.S1_at11/113+35340066..35341620hypothetical protein
LOC_Os03g62522OsAffx.13586.1.S1_at11/113+35342323..35344485hypothetical protein
LOC_Os03g62522OsAffx.13586.2.S1_at1/113+35342323..35344485hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23021.1.S1_at--643--3251Chr03:35319556..35319580 (25 bp)
CAACGGAGGTGGGTCTTCTGAGATT
LOC_Os03g62480
Os.23021.1.S1_at--973--2711Chr03:35319457..35319481 (25 bp)
AAGCAGGATTTCACCATGACACGAG
NONE
Os.23021.1.S1_at--1004--3431Chr03:35319393..35319417 (25 bp)
CAGTTGTGGCATGGTGTTCTTTTAC
NONE
Os.23021.1.S1_at--762--1471Chr03:35319362..35319386 (25 bp)
AGCAGTTGTCTTTCGGAGTTAAGCA
NONE
Os.23021.1.S1_at--775--8372Chr06:4583516..4583954 (25 bp)
TGGCGAGGCGTTTGTAAACCCCTTG
LOC_Os06g09110
Os.23021.1.S1_at--183--8131Chr03:35319318..35319342 (25 bp)
TGTAAACCCCTTGTTGGCCTAGTGG
NONE
Os.23021.1.S1_at--766--8431Chr03:35319303..35319327 (25 bp)
GGCCTAGTGGCAATTGGTCACGCTT
NONE
Os.23021.1.S1_at--682--7831Chr03:35319263..35319287 (25 bp)
GGTAATAGTGTCTTCTCCAGGGTAT
NONE
Os.23021.1.S1_at--543--1231Chr03:35319229..35319253 (25 bp)
AGTTGCCAACTCGTGGTGTCGGTAT
NONE
Os.23021.1.S1_at--1108--6831Chr03:35319194..35319218 (25 bp)
GTTTCTCCTAGTTACAATCTTTCCA
NONE
Os.23021.1.S1_at--1139--331Chr03:35319134..35319158 (25 bp)
ATAAACTCCGTACTGTCTTATGCGA
NONE
Target Sequence 
CAACGGAGGTGGGTCTTCTGAGATTGCATTTGATGAGTTCATGAGGGATTTGGAGAAGATGAACAGCTTGGAGAACGGAG
GAGGACGCAGCTGCTGATCAAGCAGGATTTCACCATGACACGAGAACTATTATTGATCATAGAAAATATTGATCCATTAA
AAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAGCAGTTGTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTG
TAAACCCCTTGTTGGCCTAGTGGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGTATTG
TGTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTACAATCTTTCCAGGGTTGTGATATT
GTTTTTTTTTTTCTGCTATCAATATAAACTCCGTACTGTCTTATGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis