Browse Element(s) Details


Os.23040.1.S1_at

Description gb:CB668440
DB_XREF= gi:29672165
DB_XREF=OSJNEd16E19.r
CLONE=OSJNEd16E19
TID=Os.23040.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.15 (P0501G01.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4346011/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23040.1.S1_at--774--4091Chr01:25189021..25189045 (25 bp)
CGACGATCACGTACGCGACGGAGGT
LOC_Os01g43460
Os.23040.1.S1_at--731--8911Chr01:25188997..25189021 (25 bp)
TGACCAACGTGCTGACGAGGGCGCT
LOC_Os01g43460
Os.23040.1.S1_at--247--4831Chr01:25188814..25188838 (25 bp)
GCTCATCCAGCTCCGACATGAAGGA
LOC_Os01g43460
Os.23040.1.S1_at--162--5311Chr01:25188795..25188819 (25 bp)
GAAGGAGTATGTGCTCTCCATCTCC
LOC_Os01g43460
Os.23040.1.S1_at--619--9291Chr01:25188752..25188776 (25 bp)
TCCGACTCGTCGGTGTCGTCCAAGG
LOC_Os01g43460
Os.23040.1.S1_at--491--4011Chr01:25188714..25188738 (25 bp)
CGATCCGTCGGTGACCAGAGTCAAG
LOC_Os01g43460
Os.23040.1.S1_at--574--1991Chr01:25188697..25188721 (25 bp)
GAGTCAAGGCGGAGCCCTAAATCGA
LOC_Os01g43460
Os.23040.1.S1_at--199--3051Chr01:25188678..25188702 (25 bp)
AATCGACCCCAAGTATAGCTATCTC
LOC_Os01g43460
Os.23040.1.S1_at--919--3691Chr01:25188660..25188684 (25 bp)
CTATCTCGTCGTTAGCTGTACATAA
LOC_Os01g43460
Os.23040.1.S1_at--926--6431Chr01:25188605..25188629 (25 bp)
GATCATCGCCTTAATATGGTTGGAC
LOC_Os01g43460
Os.23040.1.S1_at--46--5451Chr01:25188491..25188515 (25 bp)
GAACGGGCAGTTTGTAAATCTACGG
LOC_Os01g43460
Target Sequence 
CGACGATCACGTACGCGACGGAGGTGACCAACGTGCTGACGAGGGCGCTCTCCATCGGCCTCTCCGGCATCGCCACCGTC
ACCGTCGCCGGCCTGCTGGTCACCACCATGTTCCACGCCTTCGTGCTCAAGGACCTCTTCCCCAACGACGTCTCCATCGC
CATCACCCGCAAGAAGCCCAAGTTCAGCAAGATCCTCGCGCACTTCCGCTCATCCAGCTCCGACATGAAGGAGTATGTGC
TCTCCATCTCCAAGCCGCCCAGCTCCGACTCCGACTCGTCGGTGTCGTCCAAGGCCACCACCGTGACCGATCCGTCGGTG
ACCAGAGTCAAGGCGGAGCCCTAAATCGACCCCAAGTATAGCTATCTCGTCGTTAGCTGTACATAAATTCTTTAAATTAT
GATGTCTTGGGACAAAGATCATCGCCTTAATATGGTTGGACATTACGAGTAGTTAGTAATATAATATAATACGATCACAT
ATAGTATAATATCCTTGGAGCAAGTTCGTGATGATGAGGATATAGAGGTCGAACGGGCAGTTTGTAAATCTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis