Browse Element(s) Details


Os.23137.1.S1_at

Description gb:AK106530.1
DB_XREF= gi:32991739
TID=Os.23137.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.23137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H05, full insert sequence.
FL= gb:AK106530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3627010/11Pantothenate kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36240Os.28421.1.S1_at11/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36240OsAffx.18064.1.S1_at6/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006085biological_processacetyl-CoA biosynthesis
GO:0004594molecular_functionpantothenate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23137.1.S1_at--189--6311Chr09:20936200..20936224 (25 bp)
GATGAACCAGTATCAGTTCCCCTTA
LOC_Os09g36270
Os.23137.1.S1_at--169--3451Chr09:20936213..20936237 (25 bp)
CAGTTCCCCTTATGGTTGTTGAGAA
LOC_Os09g36270
Os.23137.1.S1_at--26--8671Chr09:20936242..20936266 (25 bp)
TGTGGCAGTCCGTGTATTGATTTCC
LOC_Os09g36270
Os.23137.1.S1_at--306--51Chr09:20936257..20936281 (25 bp)
ATTGATTTCCGGCAGGTTAGCTCAG
LOC_Os09g36270
Os.23137.1.S1_at--949--10451Chr09:20936273..20936297 (25 bp)
TTAGCTCAGAACTTGCTGCTGCAGC
LOC_Os09g36270
Os.23137.1.S1_at--571--1751Chr09:20936456..20936480 (25 bp)
ACCTCAATGCCCGTTTTAAGTGCGA
LOC_Os09g36270
Os.23137.1.S1_at--51--1131NONE
AGTGCGATACTCTGAAGCTGGCGAT
NONE
Os.23137.1.S1_at--824--5711Chr09:20937431..20937455 (25 bp)
GACTGCATCTGTAAATTTGAACCTG
LOC_Os09g36270
Os.23137.1.S1_at--991--5431Chr09:20937449..20937473 (25 bp)
GAACCTGTTCCTTGAACAATGCGGA
LOC_Os09g36270
Os.23137.1.S1_at--161--2991Chr09:20937476..20937500 (25 bp)
AATGTGCCGTGGATTTGGTTTGCTC
LOC_Os09g36270
Os.23137.1.S1_at--737--3751Chr09:20937767..20937791 (25 bp)
CTCTCAATGTACTAAATGCTCCTTT
LOC_Os09g36270
Target Sequence 
GATGAACCAGTATCAGTTCCCCTTATGGTTGTTGAGAATGGATGTGGCAGTCCGTGTATTGATTTCCGGCAGGTTAGCTC
AGAACTTGCTGCTGCAGCGAAAGATGCAGATTTGTTAATCTTAGAGGGCATGGGGCGATCTCTGCATACCAACCTCAATG
CCCGTTTTAAGTGCGATACTCTGAAGCTGGCGATGGTCAAGAATCAGAGATTGGCAGAAAAACTTTTCAATGGAAATATA
TATGACTGCATCTGTAAATTTGAACCTGTTCCTTGAACAATGCGGAAGAATGTGCCGTGGATTTGGTTTGCTCTAGCACA
GAAGCAGCTAATAACAGGTACATCTCACTTAATCTGTAACCAGTGGGGTCATGGTATTAGCNGTGTCACATATCCAAGCA
AAAAGCCATAAGAACAAATTTCTTATATAAGAACTAAAAGATCCTCTCAATGTACTAAATGCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis