Browse Element(s) Details


Os.23196.2.S1_at

Description gb:AK102903.1
DB_XREF= gi:32988112
TID=Os.23196.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113E15, full insert sequence.
FL= gb:AK102903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6195010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61900Os.5024.1.S1_at11/113+35029607..35030556expressed protein
LOC_Os03g61910Os.27140.1.S1_a_at11/113+35035881..35037640retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23196.2.S1_at--532--10392Chr03:35060252..35060276 (25 bp)
TTTTGTGGCCAACGTTTGACTATCC
LOC_Os03g61950
Os.23196.2.S1_at--1132--5611Chr03:35060393..35060417 (25 bp)
GACAGGACGGTTAAACGATGGACAC
LOC_Os03g61950
Os.23196.2.S1_at--34--7611Chr03:35060478..35060502 (25 bp)
GGGCAACGACGGAACGGCAACTTCA
LOC_Os03g61950
Os.23196.2.S1_at--559--8231Chr03:35060493..35060517 (25 bp)
GGCAACTTCACGTGGTGCAGACTGT
LOC_Os03g61950
Os.23196.2.S1_at--794--4511Chr03:35060547..35060571 (25 bp)
GCCCGTCGTCGAACAAAATTCCCAT
LOC_Os03g61950
Os.23196.2.S1_at--1112--7591NONE
GGGACACACGTGGTTTTACCAAGCT
NONE
Os.23196.2.S1_at--90--1711Chr03:35060614..35060638 (25 bp)
ACCAAGCTCATCACATGTTTTCACG
LOC_Os03g61950
Os.23196.2.S1_at--1077--731Chr03:35060628..35060652 (25 bp)
ATGTTTTCACGAACTTCATTTTTCT
LOC_Os03g61950
Os.23196.2.S1_at--772--7011Chr03:35060653..35060677 (25 bp)
GTACTTGGTTAATGTCGTGTTTGTC
LOC_Os03g61950
Os.23196.2.S1_at--163--6851Chr03:35060671..35060695 (25 bp)
GTTTGTCAAGGTCGTGTTTTTCATA
LOC_Os03g61950
Os.23196.2.S1_at--142--111Chr03:35060696..35060720 (25 bp)
ATTCGACTAAAGAAGCGACTGGCTG
LOC_Os03g61950
Target Sequence 
TTTTGTGGCCAACGTTTGACTATCCGTCTTATATGAAATTTTTTTATAATTAGTATTTTCATTGCTGTTAGATGATAAAA
CATAATTAATACTTTATGCGTGACTTATCTTTTTAAATTTTTTCACAAATTTTTCAAATAAGACAGGACGGTTAAACGAT
GGACACGGAAACTAGGNTTTTTTTTTTTTTNNGACGGAGGGAGTATGTGCGGTGGTGGTTGGTGGGGGCAACGACGGAAC
GGCAACTTCACGTGGTGCAGACTGTGGAGAAAGTTTGGACTTTTGGGGGGTTCCGCCCGTCGTCGAACAAAATTCCCATT
AAACGGGGCTTTTGTTTGAAAATTGGGACACACGTGGTTTTACCAAGCTCATCACATGTTTTCACGAACTTCATTTTTCT
GTACTTGGTTAATGTCGTGTTTGTCAAGGTCGTGTTTTTCATAATTCGACTAAAGAAGCGACTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23196.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis