Browse Element(s) Details


Os.23220.1.S1_at

Description gb:AK064076.1
DB_XREF= gi:32974094
TID=Os.23220.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A06, full insert sequence.
FL= gb:AK064076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3609011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36070Os.7138.1.A1_x_at10/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.50759.1.S1_at9/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36070Os.46111.1.S1_at4/115+21286980..21293326signal peptide peptidase family protein, expressed
LOC_Os05g36080Os.43567.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.53217.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36080Os.38172.1.S1_x_at3/115+21294736..21299522transposon protein, putative, unclassified
LOC_Os05g36090Os.23220.1.S1_at11/115+21305604..21309490DHHC zinc finger domain containing protein, expressed
LOC_Os05g36100OsAffx.14982.1.S1_at11/115+21321505..21325846AP2 domain containing protein
LOC_Os05g36110OsAffx.27195.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36110Os.14845.1.S1_at11/115+21326971..21331165membrane protein, putative, expressed
LOC_Os05g36120Os.17654.1.S1_at11/115+21331840..21337553Polypyrimidine tract-binding protein homolog 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23220.1.S1_at--623--6231Chr05:21308905..21308929 (25 bp)
GATGGAAGGCATTCCCAACGCCAAA
LOC_Os05g36090
Os.23220.1.S1_at--1060--2591Chr05:21308921..21308945 (25 bp)
AACGCCAAACTTGCGATAGGTTCTG
LOC_Os05g36090
Os.23220.1.S1_at--573--7891Chr05:21308939..21308963 (25 bp)
GGTTCTGAATCGCAGATTCCTGCAA
LOC_Os05g36090
Os.23220.1.S1_at--209--3951Chr05:21308984..21309008 (25 bp)
CGGCACTCGAGCTGGGATCGTAGAA
LOC_Os05g36090
Os.23220.1.S1_at--769--2731Chr05:21309067..21309091 (25 bp)
AAGAAGTGCTTCTGGCCATGAGGCT
LOC_Os05g36090
Os.23220.1.S1_at--37--4771Chr05:21309089..21309113 (25 bp)
GCTGCACCTCCATTTCAAACAGAAA
LOC_Os05g36090
Os.23220.1.S1_at--1144--2531Chr05:21309112..21309136 (25 bp)
AACTCACTAGTCAGTTATTCGTGCA
LOC_Os05g36090
Os.23220.1.S1_at--593--3571Chr05:21309242..21309266 (25 bp)
CATTTTGACTTTGACTGCCGTAATT
LOC_Os05g36090
Os.23220.1.S1_at--862--3571Chr05:21309302..21309326 (25 bp)
CTTTAGTCAAAGATTCCGTGCGGTT
LOC_Os05g36090
Os.23220.1.S1_at--1077--4971Chr05:21309416..21309440 (25 bp)
GCATGATACTCATCCACCTGTAATT
LOC_Os05g36090
Os.23220.1.S1_at--898--8211Chr05:21309459..21309483 (25 bp)
GGAATTTCTGTAGTGCATCTCCATT
LOC_Os05g36090
Target Sequence 
GATGGAAGGCATTCCCAACGCCAAACTTGCGATAGGTTCTGAATCGCAGATTCCTGCAATCGGAAGTGAGGTACGAGTGC
GGCACTCGAGCTGGGATCGTAGAAGTGGGAATTGGGACATGTCATTAGATGTAATTGGAAGAAGTGCATCAGATGTAATT
AGAAGAAGTGCTTCTGGCCATGAGGCTGCACCTCCATTTCAAACAGAAACTCACTAGTCAGTTATTCGTGCATTGAGAAG
ATGTGTCAGAAACCTGAACTTGGATTTCAAGGCTGTTTAACTGATGATGACAGTATGACACATACCCAGAGAGCAAGAAA
GAAAAATGCACATGACGCATTTTGACTTTGACTGCCGTAATTGGTATTTTCAATCATTTTTCATGTATGNACAGTTACTT
TAGTCAAAGATTCCGTGCGGTTGGGGTCACATATTTGTGTTTTTTTTTTNNCNTTTTTTGTGTGGCAATCTGATCTCACA
NCGTCTTCATGATTCTTTATGTAAATTACTATTGCATGATACTCATCCACCTGTAATTCCTCTGCAGCTTCCTTCAGGAA
TTTCTGTAGTGCATCTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis