Browse Element(s) Details


Os.23233.1.S1_at

Description gb:AK063759.1
DB_XREF= gi:32973777
TID=Os.23233.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A10, full insert sequence.
FL= gb:AK072990.1 gb:AK063759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4694011/11Copper-transporting ATPase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46990Os.46328.1.S1_x_at1/114+27634208..27635806Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47000OsAffx.26495.1.S1_at11/114+27639968..27641782hypothetical protein
LOC_Os04g47000OsAffx.14084.1.S1_x_at1/114+27639968..27641782hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009873biological_processethylene mediated signaling pathway
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23233.1.S1_at--1003--3071Chr04:27615878..27615902 (25 bp)
AATCAACGATTCTCCAGCGCTTGTA
LOC_Os04g46940
Os.23233.1.S1_at--500--1651Chr04:27615893..27615917 (25 bp)
AGCGCTTGTATCAGCCGACGTTGGC
LOC_Os04g46940
Os.23233.1.S1_at--435--5011Chr04:27615930..27615954 (25 bp)
GCAGGCACTGACGTCGCCATTGAAG
LOC_Os04g46940
Os.23233.1.S1_at--1023--8411Chr04:27615956..27615980 (25 bp)
GGCCGACATCGTCCTCATGAAGAGC
LOC_Os04g46940
Os.23233.1.S1_at--514--2611Chr04:27615981..27616005 (25 bp)
AACCTGGAAGACGTGATCACCGCCA
LOC_Os04g46940
Os.23233.1.S1_at--123--1811Chr04:27615999..27616023 (25 bp)
ACCGCCATCGATCTGTCCAGAAAAA
LOC_Os04g46940
Os.23233.1.S1_at--186--5531Chr04:27616018..27616042 (25 bp)
GAAAAACCTTCTTCCGCATACGGAT
LOC_Os04g46940
Os.23233.1.S1_at--265--1931Chr04:27616037..27616061 (25 bp)
ACGGATGAACTACGTCTGGGCGCTC
LOC_Os04g46940
Os.23233.1.S1_at--1132--7791Chr04:27616183..27616207 (25 bp)
GGTCCCTGCTGTTGAGGTACTACAA
LOC_Os04g46940
Os.23233.1.S1_at--132--7571Chr04:27616220..27616244 (25 bp)
GGGCCGTTGATCATGCAGTACACAC
LOC_Os04g46940
Os.23233.1.S1_at--622--8071Chr04:27616399..27616423 (25 bp)
GGAGCACTTTGCCAACACTAGCAGG
LOC_Os04g46940
Target Sequence 
AATCAACGATTCTCCAGCGCTTGTATCAGCCGACGTTGGCCTGGCGATTGGCGCAGGCACTGACGTCGCCATTGAAGCGG
CCGACATCGTCCTCATGAAGAGCAACCTGGAAGACGTGATCACCGCCATCGATCTGTCCAGAAAAACCTTCTTCCGCATA
CGGATGAACTACGTCTGGGCGCTCGGCTACAACATCATCGGCATACCGATCGCTGCCGGGGTGCTCTTCCCGTCGACCCG
GTTCCGCTTGCCGCCATGGGTCGCCGGCGCTGCGATGGCTGCTTCCTCCGTTAGCGTCGTCTGCTGGTCCCTGCTGTTGA
GGTACTACAAGAGCCCAAAACTGGGCCGTTGATCATGCAGTACACACGCATAGCATTTGCTTAGAATAAGAGGTGTAGAT
ATCTGTTGACAATGTGCTAATGTGGTTCTAAAAGAAATGTGCTAGTGTGTGTTGTGTGGCACCTGAAATGTGTACATTAC
CTACGTATATATGCACCGTGTGTTTACAAGTGTTAAATATGGAGCACTTTGCCAACACTAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis