Browse Element(s) Details


Os.23248.1.A1_at

Description gb:AK059248.1
DB_XREF= gi:32969266
TID=Os.23248.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G07, full insert sequence.
FL= gb:AK059248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4656011/11Malate dehydrogenase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein
LOC_Os04g46550OsAffx.14302.1.S1_at11/114+27380324..27381041hypothetical protein
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23248.1.A1_at--586--6011Chr04:27388494..27388518 (25 bp)
GAGAGACTGGATCCTTGGAACCCCA
LOC_Os04g46560
Os.23248.1.A1_at--583--771Chr04:27388626..27388650 (25 bp)
ATGGGCGTTTACTCTGACGGCAGCT
LOC_Os04g46560
Os.23248.1.A1_at--1062--9391Chr04:27388677..27388701 (25 bp)
TCGTTTCCGGTGACCTGCGAGAAGG
LOC_Os04g46560
Os.23248.1.A1_at--117--7191Chr04:27388709..27388814 (25 bp)
GTCTGTCGTGCAGGGTCTTGAGATT
LOC_Os04g46560
Os.23248.1.A1_at--846--4351Chr04:27388831..27388855 (25 bp)
CCAAGATGGAAACCTCGGCGACCGA
LOC_Os04g46560
Os.23248.1.A1_at--1058--8971Chr04:27388898..27388922 (25 bp)
TGAACTGCAACCGAGGTCCGAAGCA
LOC_Os04g46560
Os.23248.1.A1_at--170--5051Chr04:27388920..27388944 (25 bp)
GCAGAGCTTCGGTTAATGTTTACTA
LOC_Os04g46560
Os.23248.1.A1_at--615--2271Chr04:27388950..27388974 (25 bp)
AAATCGTTGCAAGGGTTTCGTCAGT
LOC_Os04g46560
Os.23248.1.A1_at--105--6291Chr04:27388975..27388999 (25 bp)
GATGTTTCTCATTGTCACGCAGTAG
LOC_Os04g46560
Os.23248.1.A1_at--484--6671Chr04:27389095..27389119 (25 bp)
GTTGCATACTTACATCTGTGAGTCG
LOC_Os04g46560
Os.23248.1.A1_at--432--8211Chr04:27389157..27389181 (25 bp)
GGAATGCACTTGTTGTCATCTACCC
LOC_Os04g46560
Target Sequence 
GAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCG
AGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGNCTTT
GCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATNGCTTATGAGTTTCTNTGATNTGAACT
GCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCT
CATTGTCACGCAGTAGATGATNCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGNN
TTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATNTGTGTTGTAT
ACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23248.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis