Browse Element(s) Details


Os.23271.2.A1_x_at

Description gb:CA759115
DB_XREF= gi:25803154
DB_XREF=BR060003B20G10.ab1
CLONE=BR060003B20G10.ab1
TID=Os.23271.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0096G08.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3802011/11expressed protein
LOC_Os06g480101/11Peroxidase 16 precursor, putative
LOC_Os08g050401/11hypothetical protein
LOC_Os04g452401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein
LOC_Os10g38030Os.21030.1.S1_at11/1110+20035645..20038586Per1-like family protein, expressed
LOC_Os10g38040Os.51639.1.S1_x_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38040Os.11882.1.S1_at11/1110+20044569..20045771LysM domain containing protein, expressed
LOC_Os10g38060Os.9389.2.S2_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S1_s_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060OsAffx.30709.1.S1_x_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38060Os.9389.2.S2_a_at11/1110+20047348..20056413Phospholipase D beta 1, putative, expressed
LOC_Os10g38050Os.9389.1.A1_a_at11/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38050OsAffx.12714.1.S1_x_at2/1110+20047512..20049888HOTHEAD protein precursor, putative, expressed
LOC_Os10g38070OsAffx.7960.1.S1_at11/1110+20058201..20059181expressed protein
LOC_Os10g38080Os.6363.1.S1_at11/1110+20059961..20062501Subtilisin N-terminal Region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23271.2.A1_x_at--750--7211Chr10:20034935..20034959 (25 bp)
GTCGAGGCGAAGTGCAGCTCCAGAA
LOC_Os10g38020
Os.23271.2.A1_x_at--918--88910Chr12:4713220..4713241 (22 bp)
TGAGTTGCATGCACCGACCAGTCTG
NONE
Os.23271.2.A1_x_at--532--5091Chr10:20034974..20034998 (25 bp)
GCACCGACCAGTCTGTTACGAGAGA
LOC_Os10g38020
Os.23271.2.A1_x_at--503--5551Chr10:20035019..20035043 (25 bp)
GAAACGATGAGACTTGCCAAGGCCT
LOC_Os10g38020
Os.23271.2.A1_x_at--788--8151Chr10:20035058..20035082 (25 bp)
GGAACACCGTGGACGTTGAACGACG
LOC_Os10g38020
Os.23271.2.A1_x_at--953--6651Chr10:20035072..20035096 (25 bp)
GTTGAACGACGTGCTGTACCACGGC
LOC_Os10g38020
Os.23271.2.A1_x_at--989--8711Chr10:20035086..20035110 (25 bp)
TGTACCACGGCGAGGATGTCATGGC
LOC_Os10g38020
Os.23271.2.A1_x_at--731--4331Chr10:20035182..20035206 (25 bp)
CCATGGCGATGGACGAGCTGTTGCA
LOC_Os10g38020
Os.23271.2.A1_x_at--663--8811Chr10:20035200..20035224 (25 bp)
TGTTGCACGAGCTGGTGAGTGACCT
LOC_Os10g38020
Os.23271.2.A1_x_at--776--8891Chr10:20035215..20035239 (25 bp)
TGAGTGACCTGATTGCGTTGCCGAA
LOC_Os10g38020
Os.23271.2.A1_x_at--709--4631Chr10:20035229..20035253 (25 bp)
GCGTTGCCGAAGTAGTTCTTTGTTT
LOC_Os10g38020
Target Sequence 
GTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAA
CGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACG
GCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTG
GTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23271.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis