Browse Element(s) Details


Os.23286.1.A1_at

Description gb:CA759137
DB_XREF= gi:25803169
DB_XREF=BR060006A10A01.ab1
CLONE=BR060006A10A01.ab1
TID=Os.23286.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome b561 (OSJNBa0079B05.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0292010/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02890OsAffx.30248.1.S1_at11/1110+1164500..1164997hypothetical protein
LOC_Os10g02900OsAffx.6559.1.S1_at11/1110+1167712..1168101hypothetical protein
LOC_Os10g02910OsAffx.424.1.S1_at11/1110+1170494..1172802hAT family dimerisation domain containing protein
LOC_Os10g02920Os.23286.1.A1_at10/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02920Os.40855.5.S1_x_at2/1110+1173962..1175936Cytochrome b561 family protein, expressed
LOC_Os10g02930Os.46070.2.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_x_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.3.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02930Os.46070.1.S1_at11/1110+1176947..1179007Helicase SEN1, putative, expressed
LOC_Os10g02940OsAffx.30249.1.S1_at11/1110+1198323..1199011hypothetical protein
LOC_Os10g02950NANA10+1200149..1200574hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23286.1.A1_at--425--10831Chr10:1174672..1174696 (25 bp)
TTGGGATAACCACTGCAGCACTCTA
LOC_Os10g02920
Os.23286.1.A1_at--91--1511Chr10:1174377..1174680 (25 bp)
AGCACTCTATGCCTTTCAGTGGCTG
LOC_Os10g02920
Os.23286.1.A1_at--692--3891Chr10:1174355..1174379 (25 bp)
CTGGTGGGTTTTGTCTACTTTGTAT
LOC_Os10g02920
Os.23286.1.A1_at--578--5771Chr10:1174314..1174338 (25 bp)
GACGATGAGGGCTGACTACGCGCCA
LOC_Os10g02920
Os.23286.1.A1_at--606--5111Chr10:1174287..1174311 (25 bp)
GCACATTTTGTTGGGCATCGTCATC
LOC_Os10g02920
Os.23286.1.A1_at--751--3631Chr10:1174209..1174233 (25 bp)
CTTCCACGGCTATCCGAGCGAAGCG
LOC_Os10g02920
Os.23286.1.A1_at--652--9191Chr10:1174125..1174149 (25 bp)
TGCCATCCTTCCATCGAGATATTAA
LOC_Os10g02920
Os.23286.1.A1_at--113--5071Chr10:1174093..1174117 (25 bp)
GCAGCTTAATTTGCAGACTAGCACG
LOC_Os10g02920
Os.23286.1.A1_at--1021--5691Chr10:1174078..1174102 (25 bp)
GACTAGCACGATCACTAAACCAAAG
LOC_Os10g02920
Os.23286.1.A1_at--971--1211Chr10:1174055..1174079 (25 bp)
AGTTCACTAGTCGATGGCATTTAAT
LOC_Os10g02920
Os.23286.1.A1_at--608--6631NONE
GTTGTAATAATTTCGAGCTTGTTCT
NONE
Target Sequence 
TTGGGATAACCACTGCAGCACTCTATGCCTTTCAGTGGCTGGTGGGTTTTGTCTACTTTGTATTCCCGGGGGCGGTGATG
ACGATGAGGGCTGACTACGCGCCATGGCACATTTTGTTGGGCATCGTCATCTTCCTCATGGCCATCTGCACCGCCGAGNC
CGGCCTAGCACGCTTCATCTTCCCCTTCCACGGCTATCCGAGCGAAGCGTTNGTCGTCAACTTCACCGGTCTCGCCATCC
TCATGTTNGGCGTTGCNGTNGTCGTGGCTGCCATCCTTCCATCGAGATATTAACAAAAATGCAGCTTAATTTGCAGACTA
GCACGATCACTAAACCAAAGTTCACTAGTCGATGGCATTTAATTTGCATGTGAGTTGTAATAATTTCGAGCTTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23286.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis