Browse Element(s) Details


Os.23310.1.A1_s_at

Description gb:CA759213
DB_XREF= gi:25803252
DB_XREF=BR060013A10E08.ab1
CLONE=BR060013A10E08.ab1
TID=Os.23310.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23310 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5004011/11phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g396504/11phytanoyl-CoA dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50010Os.20280.1.S1_at11/113+28482271..28490414chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0048244molecular_functionphytanoyl-CoA dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23310.1.A1_s_at--339--9832Chr05:23190416..23190440 (25 bp)
TACAAAGGAAAATCCCACCTCAGCC
LOC_Os05g39650
Os.23310.1.A1_s_at--432--2312Chr05:23190413..23190437 (25 bp)
AAAGGAAAATCCCACCTCAGCCACT
LOC_Os05g39650
Os.23310.1.A1_s_at--249--5512Chr05:23190409..23190433 (25 bp)
GAAAATCCCACCTCAGCCACTTTAT
LOC_Os05g39650
Os.23310.1.A1_s_at--671--4172Chr05:23190403..23190427 (25 bp)
CCCACCTCAGCCACTTTATGAAAAT
LOC_Os05g39650
Os.23310.1.A1_s_at--437--1752Chr05:23190400..23190424 (25 bp)
ACCTCAGCCACTTTATGAAAATTAG
NONE
Os.23310.1.A1_s_at--291--8752Chr05:23190314..23190338 (25 bp)
TGTAAATACCTTGCTACTCTGTTTT
NONE
Os.23310.1.A1_s_at--133--7052Chr05:23190313..23190337 (25 bp)
GTAAATACCTTGCTACTCTGTTTTC
NONE
Os.23310.1.A1_s_at--837--3092Chr05:23190310..23190334 (25 bp)
AATACCTTGCTACTCTGTTTTCATG
NONE
Os.23310.1.A1_s_at--1073--292Chr05:23190309..23190333 (25 bp)
ATACCTTGCTACTCTGTTTTCATGG
NONE
Os.23310.1.A1_s_at--765--9972Chr05:23190308..23190332 (25 bp)
TACCTTGCTACTCTGTTTTCATGGA
NONE
Os.23310.1.A1_s_at--614--4312Chr05:23190306..23190330 (25 bp)
CCTTGCTACTCTGTTTTCATGGATG
NONE
Target Sequence 
TACAAAGGAAAATCCCACCTCAGCCACTTTATGAAAATTAGTTCAAGCAGTTACCTATGTGTCAAATAGACGAGTTATGA
CCTAGAAGCNATCATGTAGCAATGTAAATACCTTGCTACTCTGTTTTCATGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23310.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis