Browse Element(s) Details


Os.23348.1.S1_at

Description gb:AK108804.1
DB_XREF= gi:32994013
TID=Os.23348.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C12, full insert sequence.
FL= gb:AK108804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0609011/11high-affinity nickel-transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06060OsAffx.12748.2.S1_at11/113+3015497..3017005Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06070Os.16556.1.S1_at11/113+3018875..3024468La domain containing protein, expressed
LOC_Os03g06080Os.7423.1.S1_at11/113+3025902..3026922heavy metal-associated domain containing protein, expressed
LOC_Os03g06090Os.23348.1.S1_at11/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06090Os.35209.1.S1_s_at1/113+3027702..3030853high-affinity nickel-transport family protein, putative, expressed
LOC_Os03g06100NANA3+3032426..3037938retrotransposon protein, putative, unclassified, expressed
LOC_Os03g06110NANA3+3040780..3043236retrotransposon protein, putative, unclassified
LOC_Os03g06120Os.15302.1.S1_at11/113+3048080..3053158Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g06139Os.8900.1.S1_a_at11/113+3055038..3065100ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015675biological_processnickel ion transport
GO:0016021cellular_componentintegral to membrane
GO:0015099molecular_functionnickel ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23348.1.S1_at--186--1331Chr03:3028231..3028255 (25 bp)
AGAGGTTCAGGAATCGTCGCTCGCC
LOC_Os03g06090
Os.23348.1.S1_at--954--5291Chr03:3028203..3028227 (25 bp)
GAAGGCGTGGACTGCAACATAACCA
LOC_Os03g06090
Os.23348.1.S1_at--10--351Chr03:3028185..3028209 (25 bp)
ATAACCAGCAGTGAGCCTTTACAAA
LOC_Os03g06090
Os.23348.1.S1_at--30--7891Chr03:3028131..3028155 (25 bp)
GGTTTTGCAACATTTGCCACTGGAG
LOC_Os03g06090
Os.23348.1.S1_at--1093--6051Chr03:3028109..3028133 (25 bp)
GAGTTGTTCATGGTCTCCAACCAGA
LOC_Os03g06090
Os.23348.1.S1_at--995--3891Chr03:3028037..3028061 (25 bp)
CTGGTGCAGCATTTCTTGGCATGTT
LOC_Os03g06090
Os.23348.1.S1_at--124--2191Chr03:3027980..3028004 (25 bp)
ACACTGCTTTTGTAGGTTCTTGTAG
LOC_Os03g06090
Os.23348.1.S1_at--106--2471Chr03:3027925..3027949 (25 bp)
AACAGAGAAACTGACCTGGGCGGCT
LOC_Os03g06090
Os.23348.1.S1_at--533--8651Chr03:3027909..3027933 (25 bp)
TGGGCGGCTTCACTTGTAGCAATAT
LOC_Os03g06090
Os.23348.1.S1_at--214--10611Chr03:3027852..3027876 (25 bp)
TTCGGTTTCAGCCTATACTAATGTA
LOC_Os03g06090
Os.23348.1.S1_at--212--5631Chr03:3027736..3027760 (25 bp)
GACACAGACTTTACACCGATTTTTT
LOC_Os03g06090
Target Sequence 
AGAGGTTCAGGAATCGTCGCTCGCCCTGGAAGGCGTGGACTGCAACATAACCAGCAGTGAGCCTTTACAAACCCCTGCTG
CTCCCAGGAAGAAGAAAGTTGGTTTTGCAACATTTGCCACTGGAGTTGTTCATGGTCTCCAACCAGATGCTCTACTGATG
GTGNTGCCTNCATTGGCCCTTCCCTCACGCTTCGCTGGTGCAGCATTTCTTGGCATGTTTTTGATGGGGACTGTATTTTC
GATGGGGAGTTACACTGCTTTTGTAGGTTCTTGTAGTGAGGCCTTGAAAGAAAAGGTCCCTAGGATAACAGAGAAACTGA
CCTGGGCGGCTTCACTTGTAGCAATATGCATGGGAATAGCTNTTCTAGTTGGGCAGTTNTTCGGTTTCAGCCTATACTAA
TGTATTCGCAATACGACATTGTTTCCTTAATATTGTTGGCAATTAGATTGGTAACAGAGGATTTTATTTGTATGACTGCA
AANNNTATACTGGTAGACACAGACTTTACACCGATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis