Browse Element(s) Details


Os.23359.1.S1_at

Description gb:AK063430.1
DB_XREF= gi:32973448
TID=Os.23359.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D09, full insert sequence.
FL= gb:AK099369.1 gb:AK063430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3985011/11DNA replication licensing factor MCM3 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39830Os.53607.1.S1_at10/115+23324798..23325874expressed protein
LOC_Os05g39840Os.51844.1.S1_at11/115+23333209..23336128expressed protein
LOC_Os05g39850OsAffx.27244.1.S1_x_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39850Os.23359.1.S1_at11/115+23336387..23341381DNA replication licensing factor MCM3 homolog, putative, expressed
LOC_Os05g39860OsAffx.15031.1.S1_at11/115+23343439..23344701expressed protein
LOC_Os05g39870OsAffx.15033.1.S1_at10/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39870OsAffx.15033.2.S1_at1/115+23346280..23350814CBL-interacting serine/threonine-protein kinase 15, putative
LOC_Os05g39880Os.46919.1.S1_at10/115+23350940..23353272expressed protein
LOC_Os05g39890NANA5+23354608..23355090NAF domain containing protein
LOC_Os05g39900OsAffx.15033.2.S1_at11/115+23358227..23359325Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23359.1.S1_at--174--4751Chr05:23341169..23341193 (25 bp)
GCTGATTACTGTGCATCATCCTTGT
LOC_Os05g39850
Os.23359.1.S1_at--1118--9611Chr05:23341184..23341208 (25 bp)
TCATCCTTGTCTTTTTCATCTGATA
LOC_Os05g39850
Os.23359.1.S1_at--474--7151Chr05:23341192..23341216 (25 bp)
GTCTTTTTCATCTGATACTTAGCCA
LOC_Os05g39850
Os.23359.1.S1_at--557--331Chr05:23341206..23341230 (25 bp)
ATACTTAGCCAGTTTGGCATTGCAG
LOC_Os05g39850
Os.23359.1.S1_at--727--1471Chr05:23341229..23341253 (25 bp)
AGAATGTCTGCATCTGCACCGGAGG
LOC_Os05g39850
Os.23359.1.S1_at--775--471Chr05:23341240..23341264 (25 bp)
ATCTGCACCGGAGGTTGATGTACCC
LOC_Os05g39850
Os.23359.1.S1_at--2--6171Chr05:23341250..23341274 (25 bp)
GAGGTTGATGTACCCGTGTATCTTA
LOC_Os05g39850
Os.23359.1.S1_at--664--7431Chr05:23341265..23341289 (25 bp)
GTGTATCTTAATTTTTAACAGCGAG
LOC_Os05g39850
Os.23359.1.S1_at--747--10431Chr05:23341292..23341316 (25 bp)
TTATGATGATCATCTGTGTCTTTGT
LOC_Os05g39850
Os.23359.1.S1_at--302--9951Chr05:23341331..23341355 (25 bp)
TACCGTAACGTAACAATTCTCCTGA
LOC_Os05g39850
Os.23359.1.S1_at--119--6431Chr05:23341354..23341378 (25 bp)
GATCTAGTGATATGTAGTCCCTGAT
LOC_Os05g39850
Target Sequence 
GCTGATTACTGTGCATCATCCTTGTCTTTTTCATCTGATACTTAGCCAGTTTGGCATTGCAGAATGTCTGCATCTGCACC
GGAGGTTGATGTACCCGTGTATCTTAATTTTTAACAGCGAGATTTATGATGATCATCTGTGTCTTTGTNCTTTAAATTCA
TGTACCGTAACGTAACAATTCTCCTGATCTAGTGATATGTAGTCCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis