Browse Element(s) Details


Os.23454.1.A1_at

Description gb:CB623231
DB_XREF= gi:29618219
DB_XREF=OSIIEa10N04.r
CLONE=OSIIEa10N04
TID=Os.23454.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.23454 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175081.1 (A.thaliana) aldehyde dehydrogenase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0781010/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g07790OsAffx.19540.1.S1_at11/1112+3935376..3937091No apical meristem protein
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
LOC_Os12g07840OsAffx.19544.1.S1_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07840OsAffx.19544.1.S1_x_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07850NANA12+3972955..3975392hypothetical protein
LOC_Os12g07860OsAffx.29764.1.S1_x_at2/1112+3976137..3976930MtN3/saliva family protein
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23454.1.A1_at--357--3971Chr12:3953849..3953872 (24 bp)
CGGTTGATAAGATCCATGAGAGCTT
LOC_Os12g07810
Os.23454.1.A1_at--939--9591Chr12:3953878..3953902 (25 bp)
TCATCAACTCCATGACAAAGGCACT
LOC_Os12g07810
Os.23454.1.A1_at--301--2931Chr12:3953922..3953946 (25 bp)
AAGGACAGCAAGCTCCAGGAACAAT
LOC_Os12g07810
Os.23454.1.A1_at--112--9211Chr12:3953935..3953959 (25 bp)
TCCAGGAACAATATGAGGCAGCCAT
LOC_Os12g07810
Os.23454.1.A1_at--137--991Chr12:3953966..3953990 (25 bp)
AGGAGGAATGCTTGTCAACGACACA
LOC_Os12g07810
Os.23454.1.A1_at--205--3011Chr12:3953972..3953996 (25 bp)
AATGCTTGTCAACGACACAGCCGTC
LOC_Os12g07810
Os.23454.1.A1_at--910--8631Chr12:3954659..3954683 (25 bp)
TGGGAGCCATGATCAAGGCTATCTT
LOC_Os12g07810
Os.23454.1.A1_at--1041--10431Chr12:3954710..3954734 (25 bp)
TTATGTCCTCAGCAATGTATATTTC
LOC_Os12g07810
Os.23454.1.A1_at--658--2331Chr12:3954744..3954768 (25 bp)
AAAGATGTATGCTGTATGTTTTCTC
LOC_Os12g07810
Os.23454.1.A1_at--544--5491Chr12:3954777..3954801 (25 bp)
GAACATTTCAGTGCAGTTGTGGGTA
LOC_Os12g07810
Os.23454.1.A1_at--617--831NONE
ATGGATGATGACTAAGTTATCTGGT
NONE
Target Sequence 
CGGTTGATAAGATCCATGAGAGCTTTGNTCTCATCAACTCCATGACAAAGGCACTTGCAGCCTNCNTNTTCACCAAGGAC
AGCAAGCTCCAGGAACAATATGAGGCAGCCATNTCTGCAGGAGGAATGCTTGTCAACGACACAGCCGTCCNCCTAACAAA
CCAGTACCTNCCTTTTGGAGGAGTTGGGGAGAGCGGCATGGGANCCTNCCATGGCAGGTTCAGNTTNGAGGCCTTCAGCC
ACAAGAAGGCCGTGNTGGTCCGCCGCTTCNCCGGCGAGGCGGCAGCGAGGTACCCNCCGTACTCGCCGGNGNAAGCTCAA
GATCCTCAGGGGAGTGCTCAAGGGCANCCTGGGAGCCATGATCAAGGCTATCTTGGGGTTTCCAAGAGGGAAATGAAATN
TTATGTCCTCAGCAATGTATATTTCNCCATGATAAAAGATGTATGCTGTATGTTTTCTCNATGAAGAGAACATTTCAGTG
CAGTTGTGGGTATAAAATAAATATGTATAGTAGGATTGGCAGATGTAATTTTATATGGATGATGACTAAGTTATCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23454.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis