Browse Element(s) Details


Os.23507.1.A1_at

Description gb:CB630493
DB_XREF= gi:29625482
DB_XREF=OSIIEb07H13.r
CLONE=OSIIEb07H13
TID=Os.23507.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0483E09.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0386010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23507.1.A1_at--575--8491Chr07:1609088..1609112 (25 bp)
TGGCATGTTCATTCTTGAGGTCACC
LOC_Os07g03860
Os.23507.1.A1_at--735--8491Chr07:1608991..1609015 (25 bp)
TGGCATAAAGGCTCACTCGCTGATA
LOC_Os07g03860
Os.23507.1.A1_at--755--691Chr07:1608930..1608954 (25 bp)
ATGAGGCCTGCCTAGCACTAAATAT
LOC_Os07g03860
Os.23507.1.A1_at--408--8231Chr07:1608858..1608882 (25 bp)
GGCAAGTCGTGCAATATCTCAACAA
LOC_Os07g03860
Os.23507.1.A1_at--99--8131Chr07:1608833..1608857 (25 bp)
GGACATACCACTACCTGAGTCAATG
LOC_Os07g03860
Os.23507.1.A1_at--952--9931Chr07:1608790..1608814 (25 bp)
TACGTGATGGCCTTGATACAGAACA
LOC_Os07g03860
Os.23507.1.A1_at--822--7931Chr07:1608763..1608787 (25 bp)
GGATTCAGTCCATGCACCATAACAG
LOC_Os07g03860
Os.23507.1.A1_at--156--9511Chr07:1608706..1608730 (25 bp)
TCTAGCACCTCACTCTCAGAAGGAA
LOC_Os07g03860
Os.23507.1.A1_at--112--5271Chr07:1608622..1608646 (25 bp)
GAATGCTTTTTACCTATCTACAGAA
LOC_Os07g03860
Os.23507.1.A1_at--132--211Chr07:1608578..1608602 (25 bp)
ATTTCCACATTTTCATGTGCCGGTT
LOC_Os07g03860
Os.23507.1.A1_at--532--771NONE
ATGTGCCGGTTATGTTTAGTTTAGT
NONE
Target Sequence 
TGGCATGTTCATTCTTGAGGTCACCTGTGGGCAAAAGCCTGTCATNCAAAACACAGAAGACGACCAATTGGTTCTTATTG
ATTGGGTGCTTGAACATTGGCATAAAGGCTCACTCGCTGATACAGTGGACATCAAACTTCAAGGAGAATACAATATTGAT
GAGGCCTGCCTAGCACTAAATATAGGGNTGCTGTGCTCCCACCCTTTAATAAGNGTAAGGCCAAATATGAGGCAAGTCGT
GCAATATCTCAACAAGGACATACCACTACCTGAGTCAATGCCAACACATTTAAGCTTNTACGTGATGGCCTTGATACAGA
ACAAAGGATTCAGTCCATGCACCATAACAGATCCTTCATCAGCAACAAGTTTTGGCNCAATATCTAGCACCTCACTCTCA
GAAGGAAGATGAATAGATGAGGCATGTGATCTTCAATAGTTTTAGGTGTGCTTGTTTATATGTTTGGAATGCTTTTTACC
TATCTACAGAATTTTATTCTCATAAAATTTATTTCCACATTTTCATGTGCCGGTTATGTTTAGTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23507.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis