Browse Element(s) Details


Os.23635.1.S1_at

Description gb:AK063795.1
DB_XREF= gi:32973813
TID=Os.23635.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23635 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F02, full insert sequence.
FL= gb:AK063795.1 gb:AK121513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6283011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23635.1.S1_at--537--9771Chr01:36719363..36719387 (25 bp)
TAAGGAGCCTAGTACTTTAGCTAGT
LOC_Os01g62830
Os.23635.1.S1_at--258--10351Chr01:36719378..36719402 (25 bp)
TTTAGCTAGTTTGGGCTTTTCAGCC
LOC_Os01g62830
Os.23635.1.S1_at--192--7591Chr01:36719390..36719414 (25 bp)
GGGCTTTTCAGCCTATAGCATCTAT
LOC_Os01g62830
Os.23635.1.S1_at--687--4971Chr01:36719407..36719431 (25 bp)
GCATCTATAAGCGACCTTTACTTTT
LOC_Os01g62830
Os.23635.1.S1_at--848--10451Chr01:36719437..36719461 (25 bp)
TTAGCTGTTTATGCTCTGTAACGAG
LOC_Os01g62830
Os.23635.1.S1_at--826--3851Chr01:36719452..36719476 (25 bp)
CTGTAACGAGGTGCAGGTCTCCAAA
LOC_Os01g62830
Os.23635.1.S1_at--623--7571Chr01:36719497..36719521 (25 bp)
GGGCGAAACGCTTTGTATCTTGAGA
LOC_Os01g62830
Os.23635.1.S1_at--526--2411Chr01:36719536..36719560 (25 bp)
AAACAATACTGTGCGTGTAACTGTA
LOC_Os01g62830
Os.23635.1.S1_at--1105--7831Chr01:36719592..36719616 (25 bp)
GGTACGCATATGCAAGTGCTATCTC
LOC_Os01g62830
Os.23635.1.S1_at--183--7331Chr01:36719607..36719631 (25 bp)
GTGCTATCTCGGTCACTGTGATTGA
LOC_Os01g62830
Os.23635.1.S1_at--921--3331Chr01:36719620..36719644 (25 bp)
CACTGTGATTGATTTGCCTCTGAAG
LOC_Os01g62830
Target Sequence 
TAAGGAGCCTAGTACTTTAGCTAGTTTGGGCTTTTCAGCCTATAGCATCTATAAGCGACCTTTACTTTTTTTTTTTAGCT
GTTTATGCTCTGTAACGAGGTGCAGGTCTCCAAAGGGAAGATTTGTGCGTCGAAGGGCGAAACGCTTTGTATCTTGAGAA
AAACGAATTTGTAAAACAATACTGTGCGTGTAACTGTATAAATTTGGTGATAGGTTCTGTATGCAGAGAGGTACGCATAT
GCAAGTGCTATCTCGGTCACTGTGATTGATTTGCCTCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis