Browse Element(s) Details


Os.23685.1.S1_x_at

Description gb:AK064623.1
DB_XREF= gi:32974641
TID=Os.23685.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0682B08.18 (P0682B08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E04, full insert sequence.
FL= gb:AK064623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1952911/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19480Os.37795.1.S1_at11/111+11055656..11060650Kelch motif family protein, expressed
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23685.1.S1_x_at--998--2511Chr01:11075548..11075572 (25 bp)
AACTATGACCCGAGGCTGACAAATA
LOC_Os01g19529
Os.23685.1.S1_x_at--424--8811Chr01:11075523..11075547 (25 bp)
TGTTGACCCGAGCTCATCTAAGGAA
LOC_Os01g19529
Os.23685.1.S1_x_at--742--2491Chr01:11075429..11075453 (25 bp)
AACATGTGAGCTGTTTCGGGAGCAT
LOC_Os01g19529
Os.23685.1.S1_x_at--416--4091Chr01:11075385..11075409 (25 bp)
CGACCTCCGCTTTGAAATGGGCTGA
LOC_Os01g19529
Os.23685.1.S1_x_at--484--391Chr01:11075322..11075346 (25 bp)
ATCAGGAGACCTGCAAGTTCTTGAA
LOC_Os01g19529
Os.23685.1.S1_x_at--462--7791Chr01:11075269..11075293 (25 bp)
GGTGCCAAAAGTACCTGCAACTGCA
LOC_Os01g19529
Os.23685.1.S1_x_at--419--9311Chr01:11075181..11075205 (25 bp)
TCCCCGACTGACAAGACAAGCCGTT
LOC_Os01g19529
Os.23685.1.S1_x_at--497--2651Chr01:11075164..11075188 (25 bp)
AAGCCGTTCGCTGCTTCAACGGATC
LOC_Os01g19529
Os.23685.1.S1_x_at--1075--3171Chr01:11075129..11075153 (25 bp)
CAATTGAAGTGTTTGGTAGTCCATA
LOC_Os01g19529
Os.23685.1.S1_x_at--4--5151Chr01:11075075..11075099 (25 bp)
GCAAAATTAACCGATCCACGCATCT
LOC_Os01g19529
Os.23685.1.S1_x_at--131--6371Chr01:11075063..11075087 (25 bp)
GATCCACGCATCTGATAACGATACT
LOC_Os01g19529
Target Sequence 
AACTATGACCCGAGGCTGACAAATATGTTGACCCGAGCTCATCTAAGGAATGGCATGACCAATGAAGCTGAATTGTTNTG
GGAGAAGGTCAAGGAAAGAGGTGGTGATTTCGATTTCGAAACATGTGAGCTGTTTCGGGAGCATTACTTGGGGAAAGGGG
ACACGACCTCCGCTTTGAAATGGGCTGAAAAGATGACCAAACTTCCCAAGAAACAAGGGAAGCAAGATCAGGAGACCTGC
AAGTTCTTGAAGTGGTTCGAAGAAGACAAGGTTGTGGAAGGTGCCAAAAGTACCTGCAACTGCAGCAACTGCTTGAGGAA
TGCGGACAGCNAGACATGTGAACCCCTCCTGGCTCCTGCAGACCTACTCCCCGACTGACAAGACAAGCCGTTCGCTGCTT
CAACGGATCAAAGAAGATTCAATTGAAGTGTTTGGTAGTCCATAGAAGTTTNTTTTTCACATATCTGAAANTTGCAAAAT
TAACCGATCCACGCATCTGATAACGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23685.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis