Browse Element(s) Details


Os.23685.2.S1_x_at

Description gb:NM_189201.1
DB_XREF= gi:34905485
GEN=P0682B08.18
TID=Os.23685.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0682B08.18 (P0682B08.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0682B08.18 (P0682B08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1952911/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19480Os.37795.1.S1_at11/111+11055656..11060650Kelch motif family protein, expressed
LOC_Os01g19490Os.6999.1.S1_at11/111+11061634..11065552pentatricopeptide, putative, expressed
LOC_Os01g19500NANA1+11068258..11068569hypothetical protein
LOC_Os01g19510Os.31529.2.A1_at3/111+11072489..11072927hypothetical protein
LOC_Os01g19529Os.23685.1.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.1.S1_x_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19529Os.23685.2.S1_at11/111+11074984..11080260pentatricopeptide, putative, expressed
LOC_Os01g19548Os.33440.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.51902.1.S1_at11/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19548Os.57167.1.S1_x_at5/111+11085843..11090765pentatricopeptide, putative, expressed
LOC_Os01g19570OsAffx.11116.1.S1_at11/111+11091513..11091908hypothetical protein
LOC_Os01g19580OsAffx.11117.1.S1_at11/111+11092969..11095341hypothetical protein
LOC_Os01g19590Os.45976.1.S1_at2/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19590Os.45976.1.S1_x_at1/111+11096797..11099398transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19600Os.46306.1.S1_x_at1/111+11101997..11105326transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23685.2.S1_x_at--603--9511Chr01:11075771..11075795 (25 bp)
TCTCGGTTTTGATCATGGCAGGCAC
LOC_Os01g19529
Os.23685.2.S1_x_at--214--851Chr01:11075757..11075781 (25 bp)
ATGGCAGGCACCCTTTTTATTTCCT
LOC_Os01g19529
Os.23685.2.S1_x_at--498--2391Chr01:11075653..11075677 (25 bp)
AACAGGACTAACTTCAGCTACCTCC
LOC_Os01g19529
Os.23685.2.S1_x_at--538--4891Chr01:11075624..11075648 (25 bp)
GCTTCAATGTCTCTATAAACTCGGT
LOC_Os01g19529
Os.23685.2.S1_x_at--707--2391Chr01:11075608..11075632 (25 bp)
AAACTCGGTGACACCGATCGGATGA
LOC_Os01g19529
Os.23685.2.S1_x_at--999--2511Chr01:11075548..11075572 (25 bp)
AACTATGACCCGAGGCTGACAAATA
LOC_Os01g19529
Os.23685.2.S1_x_at--423--8811Chr01:11075523..11075547 (25 bp)
TGTTGACCCGAGCTCATCTAAGGAA
LOC_Os01g19529
Os.23685.2.S1_x_at--741--2491Chr01:11075429..11075453 (25 bp)
AACATGTGAGCTGTTTCGGGAGCAT
LOC_Os01g19529
Os.23685.2.S1_x_at--417--4091Chr01:11075385..11075409 (25 bp)
CGACCTCCGCTTTGAAATGGGCTGA
LOC_Os01g19529
Os.23685.2.S1_x_at--483--391Chr01:11075322..11075346 (25 bp)
ATCAGGAGACCTGCAAGTTCTTGAA
LOC_Os01g19529
Os.23685.2.S1_x_at--18--8151Chr01:11075225..11075249 (25 bp)
GGACAGCAAGACATGTGAACCCCTC
LOC_Os01g19529
Target Sequence 
TCTCGGTTTTGATCATGGCAGGCACCCTTTTTATTTCCTTATGAGGCAATTTGCATCAATAGGCAATTTGAGAGGGGTCA
ACAGAGTGTGGAAAGACATAAAAATGACTTTTTCTTATAACAGGACTAACTTCAGCTACCTCCTCATGCTTCAATGTCTC
TATAAACTCGGTGACACCGATCGGATGAAGGAGATTTATAAGGAGTGGGAATATCGTTATGAAAACTATGACCCGAGGCT
GACAAATATGTTGACCCGAGCTCATCTAAGGAATGGCATGACCAATGAAGCTGAATTGTTGTGGGAGAAGGTCAAGGAAA
GAGGTGGTGATTTCGATTTCGAAACATGTGAGCTGTTTCGGGAGCATTACTTGGGGAAAGGGGACACGACCTCCGCTTTG
AAATGGGCTGAAAAGATGACCAAACTTCCCAAGAAACAAGGGAAGCAAGATCAGGAGACCTGCAAGTTCTTGAAGTGGTT
CGAAGAAGACAAGGTTGTGGAAGGTGCCAAAAGTACCTGCAACTGCAGCAACTGCTTGAGGAATGCGGACAGCAAGACAT
GTGAACCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23685.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis