Browse Element(s) Details


Os.23844.1.A1_at

Description gb:AK103711.1
DB_XREF= gi:32988920
TID=Os.23844.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137D23, full insert sequence.
FL= gb:AK103711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4101011/11senescence-associated protein SAG102, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40990Os.8689.1.S1_at11/111+23516210..23540540expressed protein
LOC_Os01g41000Os.35033.1.S1_x_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41000OsAffx.9169.1.S1_at2/111+23541470..23542145hypothetical protein
LOC_Os01g41010Os.23844.1.A1_at11/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41010Os.5777.1.S1_x_at5/111+23551199..23553468senescence-associated protein SAG102, putative, expressed
LOC_Os01g41020OsAffx.11416.1.S1_at11/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_at6/111+23554720..23559224hypothetical protein
LOC_Os01g41020Os.5777.1.S1_x_at3/111+23554720..23559224hypothetical protein
LOC_Os01g41030Os.45880.1.S1_at1/111+23562064..2356452050S ribosomal protein, putative, expressed
LOC_Os01g41040OsAffx.11417.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41040Os.35080.1.S1_at11/111+23566665..23570840Protein SYS1 homolog, putative, expressed
LOC_Os01g41050OsAffx.29576.1.S1_at11/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050Os.27925.2.A1_at1/111+23574244..23577223sulfate transporter 3.5, putative
LOC_Os01g41050OsAffx.29576.3.S1_x_at1/111+23574244..23577223sulfate transporter 3.5, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23844.1.A1_at--614--2091Chr01:23552739..23552903 (25 bp)
ACATCTACGTCTATCAGGGTGACAA
LOC_Os01g41010
Os.23844.1.A1_at--1110--5611Chr01:23552899..23552923 (25 bp)
GACAAAGCCTTTTGCAGCATGGAGT
LOC_Os01g41010
Os.23844.1.A1_at--1106--1651Chr01:23552989..23553013 (25 bp)
AGCCCAGTCGCCAACGATGGTTGTA
LOC_Os01g41010
Os.23844.1.A1_at--423--10811Chr01:23553009..23553033 (25 bp)
TTGTATTTTCCAACTGATCCAGTGA
LOC_Os01g41010
Os.23844.1.A1_at--710--9551Chr01:23553062..23553086 (25 bp)
TCTTATCTGAAGTGCTGTCCGAGGT
LOC_Os01g41010
Os.23844.1.A1_at--1064--8991Chr01:23553135..23553159 (25 bp)
TGAAGATTTTGTCTGCCGCGGCACT
LOC_Os01g41010
Os.23844.1.A1_at--727--4691Chr01:23553152..23553176 (25 bp)
GCGGCACTGATGAATTTACCTATTG
LOC_Os01g41010
Os.23844.1.A1_at--1138--2311Chr01:23553266..23553290 (25 bp)
AAAGGGCGTGCGTCTGAGTTTGAAT
LOC_Os01g41010
Os.23844.1.A1_at--874--10831Chr01:23553291..23553315 (25 bp)
TTGTGTTTGCTTGAACCTCATCTTC
LOC_Os01g41010
Os.23844.1.A1_at--668--5431Chr01:23553303..23553327 (25 bp)
GAACCTCATCTTCAATCGGCTGTCA
LOC_Os01g41010
Os.23844.1.A1_at--297--7131Chr01:23553324..23553348 (25 bp)
GTCATGTTGACACCATTGATCACTA
LOC_Os01g41010
Target Sequence 
ACATCTACGTCTATCAGGGTGACAAAGCCTTTTGCAGCATGGAGTGCCGGGAGAATTTCATGGAAGATGAGATGGAAGAA
GGCGAACCNNATCTCTCTGCACCTCCTNNCAGCCCAGTCGCCAACGATGGTTGTATTTTCCAACTGATCCAGTGAACGAG
CATCAGTAAACAACTTGATATGGTCTTATCTGAAGTGCTGTCCGAGGTTAATAAGTTGCAGCCATGGATGTGNATCATAT
TTCATTGAGTTGTTGCCTGAAGATTTTGTCTGCCGCGGCACTGATGAATTTACCTATTGATTTCTTAATTTTACTTACCC
GGNATCCTCGNAATTTTTGGAGGNNCCTGAACGGTAACTTTGCTTCCNGGTCATATTNATTNANTTTTGGTCGGNAAAGG
GCGTGCGTCTGAGTTTGAATTTGTGTTTGCTTGAACCTCATCTTCAATCGGCTGTCATGTTGACACCATTGATCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23844.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis