Browse Element(s) Details


Os.23883.1.S1_a_at

Description gb:AK071116.1
DB_XREF= gi:32981139
TID=Os.23883.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081A17, full insert sequence.
FL= gb:AK058508.1 gb:AK071116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2707011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27040Os.54874.1.S1_at10/119+16443341..16446966GEX1, putative, expressed
LOC_Os09g27050Os.18226.1.S1_a_at11/119+16454049..16457584RSH2, putative, expressed
LOC_Os09g27060Os.6189.1.S1_s_at11/119+16460643..16466274chromatin complex subunit A101, putative, expressed
LOC_Os09g27070Os.23883.1.S1_a_at11/119+16469985..16473557expressed protein
LOC_Os09g27070Os.17302.1.S1_at2/119+16469985..16473557expressed protein
LOC_Os09g27080Os.11585.1.S1_at11/119+16476014..16480747Plant protein family protein, expressed
LOC_Os09g27090OsAffx.17919.1.S1_at10/119+16483145..16485822F-box domain containing protein
LOC_Os09g27100OsAffx.17920.1.S1_at11/119+16486747..16489212F-box domain containing protein
LOC_Os09g27110OsAffx.17921.1.S1_at11/119+16490568..16492883expressed protein
LOC_Os09g27120OsAffx.30052.1.S1_at11/119+16494698..16495444hypothetical protein
LOC_Os09g27130Os.19439.2.S1_at9/119+16496639..16497930transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23883.1.S1_a_at--470--6251Chr09:16472862..16472886 (25 bp)
GATGGTTCACAGTCAGGTTCAACTT
LOC_Os09g27070
Os.23883.1.S1_a_at--1135--3157Chr09:16473051..16473075 (25 bp)
AATTGTTGGGTTCTGTTTTGCACTT
LOC_Os09g27070
Os.23883.1.S1_a_at--622--4771Chr09:16473076..16473100 (25 bp)
GCTGCTCTACTGTTCTTTGGATTAA
LOC_Os09g27070
Os.23883.1.S1_a_at--463--7071Chr09:16473114..16473138 (25 bp)
GTAATACACCTGTCGCTGCTGAAGA
LOC_Os09g27070
Os.23883.1.S1_a_at--938--6691Chr09:16473182..16473206 (25 bp)
GTTCCTCCTCACATTGCGGAAGTGA
LOC_Os09g27070
Os.23883.1.S1_a_at--357--8651Chr09:16473226..16473250 (25 bp)
TGTGGCTTCCACTTTACTATTAATT
LOC_Os09g27070
Os.23883.1.S1_a_at--575--10871Chr09:16473249..16473273 (25 bp)
TTGGCTTAGCTCTTCAAAACTATGG
LOC_Os09g27070
Os.23883.1.S1_a_at--67--10591Chr09:16473274..16473298 (25 bp)
TTCTCTCGGTACCATGTGTTTGTTT
LOC_Os09g27070
Os.23883.1.S1_a_at--148--2491Chr09:16473304..16473328 (25 bp)
AACAGGTTTCCATGTATTCTTGTAT
LOC_Os09g27070
Os.23883.1.S1_a_at--386--5151Chr09:16473375..16473399 (25 bp)
GCAACCTGGTGCTTCATTCGTTAAT
LOC_Os09g27070
Os.23883.1.S1_a_at--279--231Chr09:16473438..16473462 (25 bp)
ATATTCCTGTAACATGATCCTTGGG
LOC_Os09g27070
Target Sequence 
GATGGTTCACAGTCAGGTTCAACTTCAAATCAGAAGGAAAGGCATTTGCTACAATTGTTGGGTTCTGTTTTGCACTTGCT
GCTCTACTGTTCTTTGGATTAACAATACTTTGGGCGTAATACACCTGTCGCTGCTGAAGAATCACATAGAAGACCAAGAA
CACTGGTGAAATAAAAAGATTGGGTTCCTCCTCACATTGCGGAAGTGAACCTTTATGCAATCAGTAATGTGGCTTCCACT
TTACTATTAATTGGCTTAGCTCTTCAAAACTATGGTTCTCTCGGTACCATGTGTTTGTTTTTGNAAACAGGTTTCCATGT
ATTCTTGTATNAGTAGCTATTCTCAATTCTCATTTACATAATTCACCTGCAAGTNTGCAACCTGGTGCTTCATTCGTTAA
TCGTTCATAATCTGGAACATNTTCAGTGTACAACTGTACATATTCCTGTAACATGATCCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23883.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis