Browse Element(s) Details


Os.23963.1.A1_at

Description gb:CA760956
DB_XREF= gi:25804995
DB_XREF=BR060009A20A03.ab1
CLONE=BR060009A20A03.ab1
TID=Os.23963.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23963 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0310011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03110Os.49076.1.S1_at11/111+1195489..1200304expressed protein
LOC_Os01g03119OsAffx.1737.1.S1_at3/111+1208373..1210915NA

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23963.1.A1_at--344--4311Chr01:1184208..1184232 (25 bp)
CCATCACTGCATGATCTGCCATTGT
LOC_Os01g03100
Os.23963.1.A1_at--61--10871Chr01:1184184..1184208 (25 bp)
TTGGAGCCTCCTCAGGTGCAGTGAA
LOC_Os01g03100
Os.23963.1.A1_at--1013--4991Chr01:1184167..1184191 (25 bp)
GCAGTGAAATGCAGTCCTAATCCTG
LOC_Os01g03100
Os.23963.1.A1_at--1030--7251Chr01:1184154..1184178 (25 bp)
GTCCTAATCCTGCTCAGTTAGCTTG
LOC_Os01g03100
Os.23963.1.A1_at--911--1211Chr01:1184139..1184163 (25 bp)
AGTTAGCTTGAGCAGGTCTACACCT
LOC_Os01g03100
Os.23963.1.A1_at--651--1031Chr01:1184126..1184150 (25 bp)
AGGTCTACACCTGAGCAGAGTCCTC
LOC_Os01g03100
Os.23963.1.A1_at--753--1131Chr01:1184108..1184132 (25 bp)
AGTCCTCCATCTTAACCATTCATAG
LOC_Os01g03100
Os.23963.1.A1_at--191--291Chr01:1184087..1184111 (25 bp)
ATAGTATATGCTACAATCTTCCTTG
LOC_Os01g03100
Os.23963.1.A1_at--385--9851Chr01:1184076..1184100 (25 bp)
TACAATCTTCCTTGGCTGGATCATA
LOC_Os01g03100
Os.23963.1.A1_at--223--8351Chr01:1184063..1184087 (25 bp)
GGCTGGATCATAACTCTGGGATCTA
LOC_Os01g03100
Os.23963.1.A1_at--557--7951Chr01:1184045..1184069 (25 bp)
GGATCTAGATCACTTAACCCTGCAG
LOC_Os01g03100
Target Sequence 
CCATCACTGCATGATCTGCCATTGTTGGAGCCTCCTCAGGTGCAGTGAAATGCAGTCCTAATCCTGCTCAGTTAGCTTGA
GCAGGTCTACACCTGAGCAGAGTCCTCCATCTTAACCATTCATAGTATATGCTACAATCTTCCTTGGCTGGATCATAACT
CTGGGATCTAGATCACTTAACCCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23963.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis