Browse Element(s) Details


Os.23970.1.S1_at

Description gb:AK069871.1
DB_XREF= gi:32979895
TID=Os.23970.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039P22, full insert sequence.
FL= gb:AK069871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2017011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20150OsAffx.22947.2.S1_x_at9/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.3.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.1.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.5.S1_x_at3/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20160OsAffx.31072.1.S1_at11/1111+11627877..11629508O-methyltransferase family protein, expressed
LOC_Os11g20170Os.23970.1.S1_at11/1111+11638865..11640337expressed protein
LOC_Os11g20180NANA11+11643740..11644781hypothetical protein
LOC_Os11g20190NANA11+11646862..11648176retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20200OsAffx.22946.1.S1_at3/1111+11650759..11653064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20210NANA11+11653648..11653989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20220NANA11+11654314..11657771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20239Os.50578.1.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.1.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36393.1.S1_at3/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.46050.1.A1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.11220.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.25740.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.26930.1.S1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36149.1.S1_x_at1/1111+11663061..11683420expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23970.1.S1_at--970--2191Chr11:11639275..11639299 (25 bp)
ACAACATCTTTGCTGGTTCCTAGCG
LOC_Os11g20170
Os.23970.1.S1_at--870--7891Chr11:11639289..11639313 (25 bp)
GGTTCCTAGCGGTTCAAGAGCTGCT
LOC_Os11g20170
Os.23970.1.S1_at--997--2771Chr11:11639304..11639328 (25 bp)
AAGAGCTGCTATAGCCGTTGACCTT
LOC_Os11g20170
Os.23970.1.S1_at--212--6651Chr11:11639320..11639344 (25 bp)
GTTGACCTTGGTGGTTCCGAGCAGA
LOC_Os11g20170
Os.23970.1.S1_at--403--9851Chr11:11639395..11639508 (25 bp)
TACAACCCGAGATGCAGGCCTTGTG
LOC_Os11g20170
Os.23970.1.S1_at--664--8431Chr11:11639500..11639524 (25 bp)
GGCCTTGTGCGATCGAGATGCTTGA
LOC_Os11g20170
Os.23970.1.S1_at--407--4451Chr11:11639544..11639568 (25 bp)
GCCTTTTTAGGCTTGATCTTTGCAT
LOC_Os11g20170
Os.23970.1.S1_at--619--7791Chr11:11639597..11639621 (25 bp)
GGTCGTTTTGGCCAGCAGAAAATTT
LOC_Os11g20170
Os.23970.1.S1_at--47--4971Chr11:11639694..11639718 (25 bp)
GCATCTTACCATCTGTTATCTATGT
LOC_Os11g20170
Os.23970.1.S1_at--1066--6871Chr11:11639836..11639860 (25 bp)
GTATTTCATTTCATGTTTCCGTGAT
LOC_Os11g20170
Os.23970.1.S1_at--886--1231Chr11:11639872..11639896 (25 bp)
AGTTCCTCCTATACCTTGACTTATA
LOC_Os11g20170
Target Sequence 
ACAACATCTTTGCTGGTTCCTAGCGGTTCAAGAGCTGCTATAGCCGTTGACCTTGGTGGTTCCGAGCAGAGGATGGCTGC
CTGGCAATNTGGAAGNTGCTNTCCATCCGCCGCCCGCCCCTACAACCCGAGATGCAGGCCTTGTGCGATCGAGATGCTTG
ATTTGGATNTGCTGCTTTATGCCTTTTTAGGCTTGATCTTTGCATCTGTTTGGGATGATCCAAGAAACCGTTTGGTCGTT
TTGGCCAGCAGAAAATTTCCGGCAGCTGAGGGAANAAGCGATNTGCATCCTGTGCTTGTGATGAGAGGGACATGTTCATN
TGAAGCATNTGCATCTTACCATCTGTTATCTATGTTTTGTATTTTGAGTTTTTTTTTACCAAGGTCGTCTCTTTTGTTTN
GTAGCAGACAATGGTGAAGACGCNCCNGTAGTAGTTNTTCATATTTTTCTGTTNTTAAGGTNTTCGTCAACTAGTATTTC
ATTTCATGTTTCCGTGATATGAAACGTGGAGTTCCTCCTATACCTTGACTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis