Browse Element(s) Details


OsAffx.31072.1.S1_at

Description tigr:9639.m01888
TID=OsAffx.31072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2016011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20120Os.48015.1.A1_x_at2/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120Os.54151.1.S1_x_at2/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120Os.38764.1.S1_x_at1/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20120OsAffx.22699.1.S1_x_at1/1111+11597599..11603078retrotransposon protein, putative, unclassified
LOC_Os11g20130OsAffx.18957.1.S1_at11/1111+11606567..11607019hypothetical protein
LOC_Os11g20140NANA11+11610192..11610662hypothetical protein
LOC_Os11g20150OsAffx.22947.2.S1_x_at9/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.3.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.1.S1_x_at6/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20150OsAffx.22947.5.S1_x_at3/1111+11616599..11622967retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20160OsAffx.31072.1.S1_at11/1111+11627877..11629508O-methyltransferase family protein, expressed
LOC_Os11g20170Os.23970.1.S1_at11/1111+11638865..11640337expressed protein
LOC_Os11g20180NANA11+11643740..11644781hypothetical protein
LOC_Os11g20190NANA11+11646862..11648176retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g20200OsAffx.22946.1.S1_at3/1111+11650759..11653064retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20210NANA11+11653648..11653989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20220NANA11+11654314..11657771retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31072.1.S1_at--278--8071Chr11:11628727..11628751 (25 bp)
GGACCTTCCACGGTTGGTCGATCAT
LOC_Os11g20160
OsAffx.31072.1.S1_at--345--591Chr11:11628704..11628728 (25 bp)
ATGCCCCTCGTGACGGTGTCGTCAA
LOC_Os11g20160
OsAffx.31072.1.S1_at--852--8611Chr11:11628670..11628694 (25 bp)
TGGTGACGCGTTCCAGTGTACCATC
LOC_Os11g20160
OsAffx.31072.1.S1_at--538--9091Chr11:11628449..11628650 (25 bp)
TGCTCAAGCTTGTTCTGCATCACTT
LOC_Os11g20160
OsAffx.31072.1.S1_at--296--391Chr11:11628431..11628455 (25 bp)
ATCACTTGAGCGACGATGACTGCGT
LOC_Os11g20160
OsAffx.31072.1.S1_at--930--7351Chr11:11628408..11628432 (25 bp)
GTGAAGATCCTAGCTCAGTGCAAAA
LOC_Os11g20160
OsAffx.31072.1.S1_at--149--7571Chr11:11628315..11628339 (25 bp)
GGGCCTGTAATGTTCGAAGCGCAGC
LOC_Os11g20160
OsAffx.31072.1.S1_at--591--4111Chr11:11628301..11628325 (25 bp)
CGAAGCGCAGCTCATGATGGACATG
LOC_Os11g20160
OsAffx.31072.1.S1_at--1054--5211Chr11:11628265..11628289 (25 bp)
GAATACTAGAGGTCGTCAACGGAAC
LOC_Os11g20160
OsAffx.31072.1.S1_at--695--6611Chr11:11628234..11628258 (25 bp)
GATTGGCATGACCTGTTCATGACAG
LOC_Os11g20160
OsAffx.31072.1.S1_at--838--9611Chr11:11628218..11628242 (25 bp)
TCATGACAGCAGGATTCAGTGACTA
LOC_Os11g20160
Target Sequence 
GGACCTTCCACGGTTGGTCGATCATGCCCCTCGTGACGGTGTCGTCAACTACGTCGCTGGTGACGCGTTCCAGTGTACCA
TCCCACCCGCCCAAGCAGTCATGCTCAAGCTTGTTCTGCATCACTTGAGCGACGATGACTGCGTGAAGATCCTAGCTCAG
TGCAAAAAGGCTATTCCTTCACGAAAGGAGGGCGGGAAGTTGATTGTCATAGATATCTTGGTTGAACCATCTTTGGGGCC
TGTAATGTTCGAAGCGCAGCTCATGATGGACATGCTCATGATGGTGAATACTAGAGGTCGTCAACGGAACGAAAATGATT
GGCATGACCTGTTCATGACAGCAGGATTCAGTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis