Browse Element(s) Details


Os.24000.1.S1_at

Description gb:CA761028
DB_XREF= gi:25805067
DB_XREF=BR060001000H12.ab1
CLONE=BR060001000H12.ab1
TID=Os.24000.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24000 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1056011/11hypothetical protein
LOC_Os11g412604/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10540Os.25261.1.S1_at11/117+5690180..5698183aminopeptidase P, cytosolic, putative, expressed
LOC_Os07g10550Os.52905.1.S2_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10550Os.52905.1.S1_at11/117+5701086..5709587cyclin, putative, expressed
LOC_Os07g10560Os.24000.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10560OsAffx.28388.1.S1_at11/117+5722282..5724815hypothetical protein
LOC_Os07g10570Os.11099.2.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.11099.1.S1_x_at11/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.8502.5.S1_x_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10570Os.26611.1.S1_at1/117+5735180..573596213 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.8177.1.S1_a_at11/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.16367.1.S1_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10580Os.11099.1.S1_x_at1/117+5740151..574081813 kDa prolamin precursor, putative, expressed
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24000.1.S1_at--993--1211Chr07:5724066..5724090 (25 bp)
AGTTAAGATTTTTCCAGCTGCTAAT
LOC_Os07g10560
Os.24000.1.S1_at--47--1611Chr07:5724051..5724075 (25 bp)
AGCTGCTAATATATATCCTGTGTAT
LOC_Os07g10560
Os.24000.1.S1_at--69--4871Chr07:5724008..5724032 (25 bp)
GCTAGCTATTCATTTGCATGTTTGC
LOC_Os07g10560
Os.24000.1.S1_at--900--6311Chr07:5723982..5724006 (25 bp)
GATGAACTGCACACTATTTGTCAAT
LOC_Os07g10560
Os.24000.1.S1_at--547--3691Chr07:5723969..5723993 (25 bp)
CTATTTGTCAATTCATGTGTGTGCA
LOC_Os07g10560
Os.24000.1.S1_at--231--5491Chr07:5723920..5723944 (25 bp)
GAACTTCTCTTGTTTATTTTGCACT
LOC_Os07g10560
Os.24000.1.S1_at--510--10692Chr11:24232993..24233017 (25 bp)
TTGTTTATTTTGCACTCAAGGCGTT
LOC_Os11g41260
Os.24000.1.S1_at--60--5752Chr11:24233019..24233065 (24 bp)
GACGGAATGCCCATGGTATAATTAC
LOC_Os11g41260
Os.24000.1.S1_at--1035--1011Chr07:5723848..5723872 (25 bp)
AGGTATATAATTAACGGTCTCATCG
LOC_Os07g10560
Os.24000.1.S1_at--804--7152Chr11:24233109..24233133 (25 bp)
GTCTCATCGTTTCTTGGCATTGTCA
LOC_Os11g41260
Os.24000.1.S1_at--1072--1252Chr11:24233162..24233186 (25 bp)
AGATTAGTTTCTGTTCTCTCAATAA
LOC_Os11g41260
Target Sequence 
AGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTT
TGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATNTTAGTTGAATAGAACTTCTCTTGTT
TATTTTGCACTCAAGGCGTTNGACGGAATGCCCATGGTATAATTACTGACTGTNTTATAGGTATATAATTAACGGTCTCA
TCGTTTCTTGGCATTGTCANAAACGACATGCTGGCCTCTCAAATTNTAGATTAGTTTCTGTTCTCTCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis