Browse Element(s) Details


Os.24051.2.S1_at

Description gb:AK121151.1
DB_XREF= gi:37990774
TID=Os.24051.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078I08, full insert sequence.
FL= gb:AK121151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3364010/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24051.2.S1_at--63--9751Chr04:20189982..20190006 (25 bp)
TAATCACCTATATGCTCATGCCACA
LOC_Os04g33640
Os.24051.2.S1_at--1007--251Chr04:20189991..20190015 (25 bp)
ATATGCTCATGCCACATACTAGTAT
LOC_Os04g33640
Os.24051.2.S1_at--696--6911Chr04:20190012..20190036 (25 bp)
GTATGCTCAAAGATTAACCTAATAT
LOC_Os04g33640
Os.24051.2.S1_at--276--9891Chr04:20190037..20190061 (25 bp)
TACATTACTCCAGGGATGCTTCGGG
LOC_Os04g33640
Os.24051.2.S1_at--486--251Chr04:20190312..20190336 (25 bp)
ATATCAGTGGGACAATCATCGGTAC
LOC_Os04g33640
Os.24051.2.S1_at--383--8151Chr04:20190321..20190345 (25 bp)
GGACAATCATCGGTACATAAGTTCA
LOC_Os04g33640
Os.24051.2.S1_at--810--7011Chr04:20190365..20190389 (25 bp)
GTACATATTATGTGGCCCTTTTCGA
LOC_Os04g33640
Os.24051.2.S1_at--1035--7531Chr04:20190376..20190400 (25 bp)
GTGGCCCTTTTCGATGTGTAATAAT
LOC_Os04g33640
Os.24051.2.S1_at--352--1211Chr04:20190412..20190436 (25 bp)
AGTTTCAGGGCGTAGTACTCGTGCA
LOC_Os04g33640
Os.24051.2.S1_at--1049--1171NONE
AGTACTCGTGCAGACAGGTGTGTGT
NONE
Os.24051.2.S1_at--129--2071Chr04:20190521..20190545 (25 bp)
ACATTTTTACTTATTATCCCACACA
LOC_Os04g33640
Target Sequence 
TAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGG
AGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGC
ATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATC
TGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTG
TATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCC
CTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAGGTGTGTGTNNATAGTACAGT
AGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATTATCC
CACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24051.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis