Browse Element(s) Details


Os.24053.1.A1_at

Description gb:CA761127
DB_XREF= gi:25805166
DB_XREF=BR060002B20E05.ab1
CLONE=BR060002B20E05.ab1
TID=Os.24053.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24053 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4191011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41870Os.54439.1.S1_at10/114+24591237..24592046expressed protein
LOC_Os04g41880OsAffx.14234.1.S1_at11/114+24602933..24604198transposon protein, putative, unclassified
LOC_Os04g41890OsAffx.26422.1.S1_at11/114+24606435..24608528hypothetical protein
LOC_Os04g41900Os.11538.1.S1_at11/114+24611283..24612280expressed protein
LOC_Os04g41900Os.24023.1.A1_x_at1/114+24611283..24612280expressed protein
LOC_Os04g41910Os.24827.1.S1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41910Os.24053.1.A1_at11/114+24615322..24620689RNA recognition motif family protein, expressed
LOC_Os04g41920Os.6933.1.S1_at11/114+24622208..24624571expressed protein
LOC_Os04g41930OsAffx.4053.1.S1_at11/114+24625088..24625944expressed protein
LOC_Os04g41950Os.49714.1.S1_at11/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.20033.1.S1_at2/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950OsAffx.14235.1.A1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41950Os.15749.1.S1_at1/114+24627808..24634844EF hand family protein, expressed
LOC_Os04g41960Os.15917.1.S1_at11/114+24638994..24640566NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os04g41970OsAffx.26423.1.S1_at11/114+24644896..24648498endo-1,4-beta-glucanase Cel1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24053.1.A1_at--1073--831Chr04:24618324..24618348 (25 bp)
ATGGAAGGTTATATCCCCACTGCTT
LOC_Os04g41910
Os.24053.1.A1_at--430--4371Chr04:24618340..24618364 (25 bp)
CCACTGCTTGCTTGCATCATTTTTT
LOC_Os04g41910
Os.24053.1.A1_at--415--1431Chr04:24618406..24618754 (25 bp)
AGAACATTATGTTACAGAACCCCAT
LOC_Os04g41910
Os.24053.1.A1_at--5--2391Chr04:24618431..24618455 (25 bp)
AAACTGTTTTTTGTATTCAGGATGT
LOC_Os04g41910
Os.24053.1.A1_at--225--7991Chr04:24618450..24618474 (25 bp)
GGATGTTGATTAAGCATTATGCCAT
LOC_Os04g41910
Os.24053.1.A1_at--619--591Chr04:24618468..24618492 (25 bp)
ATGCCATTGTATAATGAGCACATGC
LOC_Os04g41910
Os.24053.1.A1_at--24--5951Chr04:24618483..24618507 (25 bp)
GAGCACATGCTTTGGTAGTCATGCA
LOC_Os04g41910
Os.24053.1.A1_at--832--631Chr04:24618489..24618513 (25 bp)
ATGCTTTGGTAGTCATGCAAGGAAA
LOC_Os04g41910
Os.24053.1.A1_at--742--2251Chr04:24618512..24618536 (25 bp)
AAATATTTTATCATCAGCCGAACAT
LOC_Os04g41910
Os.24053.1.A1_at--808--391Chr04:24618524..24618548 (25 bp)
ATCAGCCGAACATGAGCTTTGAATG
LOC_Os04g41910
Os.24053.1.A1_at--804--5911Chr04:24618537..24618561 (25 bp)
GAGCTTTGAATGATATAACTTGTTT
LOC_Os04g41910
Target Sequence 
ATGGAAGGTTATATCCCCACTGCTTGCTTGCATCATTTTTTTTTAATCTTTTCATTTTATGAAGGAATACTGAAGAGAGA
CACAGAACATTATGTTACAGAACCCCATAAACTGTTTTTTGTATTCAGGATGTTGATTAAGCATTATGCCATTGTATAAT
GAGCACATGCTTTGGTAGTCATGCAAGGAAAATATTTTATCATCAGCCGAACATGAGCTTTGAATGATATAACTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24053.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis