Browse Element(s) Details


Os.24057.1.A1_at

Description gb:AK110612.1
DB_XREF= gi:32995821
TID=Os.24057.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H05, full insert sequence.
FL= gb:AK110612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1962011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19580OsAffx.16467.1.S1_at3/115+11383597..11386058hypothetical protein
LOC_Os05g19580Os.26886.6.S1_s_at2/115+11383597..11386058hypothetical protein
LOC_Os05g19580Os.26886.2.S1_s_at2/115+11383597..11386058hypothetical protein
LOC_Os05g19590Os.17740.1.S1_x_at1/115+11392507..11397016retrotransposon protein, putative, unclassified, expressed
LOC_Os05g19600NANA5+11397430..11398784Alpha-expansin 11 precursor, putative, expressed
LOC_Os05g19610OsAffx.14762.1.S1_at10/115+11400912..11405671hypothetical protein
LOC_Os05g19620Os.24057.1.A1_at11/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.7216.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19620OsAffx.6363.1.S1_at2/115+11410701..11414726expressed protein
LOC_Os05g19630Os.7254.1.S1_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed
LOC_Os05g19630Os.7254.2.S1_x_at10/115+11415600..11418456Peptide chain release factor 1, putative, expressed
LOC_Os05g19640NANA5+11431573..11431896hypothetical protein
LOC_Os05g19650Os.45173.5.S1_x_at4/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19650Os.45173.1.S1_x_at2/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24057.1.A1_at--957--1031Chr05:11414303..11414327 (25 bp)
AGGTGAGCCAACATTGAACAGCATC
LOC_Os05g19620
Os.24057.1.A1_at--145--7651Chr05:11414334..11414358 (25 bp)
GGGAGCTAATTGTTCTTCACAGTGA
LOC_Os05g19620
Os.24057.1.A1_at--842--5031Chr05:11414366..11414390 (25 bp)
GCAGTTCTTGCAGGTTCAGCTGACA
LOC_Os05g19620
Os.24057.1.A1_at--593--9151Chr05:11414410..11414434 (25 bp)
TGCCCCACTGTTTGGGACCTTGCAA
LOC_Os05g19620
Os.24057.1.A1_at--1116--10671Chr05:11414478..11414502 (25 bp)
TTCCATGCCATTATGCTTCTTGTGT
LOC_Os05g19620
Os.24057.1.A1_at--984--7411Chr05:11414499..11414523 (25 bp)
GTGTAGCAAGTGATTCTATTCCCAG
LOC_Os05g19620
Os.24057.1.A1_at--427--10211Chr05:11414515..11414539 (25 bp)
TATTCCCAGAAGCACAAGTTCAGGT
LOC_Os05g19620
Os.24057.1.A1_at--211--6751Chr05:11414532..11414556 (25 bp)
GTTCAGGTGTACAGAGGCTTGCAAT
LOC_Os05g19620
Os.24057.1.A1_at--392--10751Chr05:11414561..11414585 (25 bp)
TTGAAACCCCAATTTGGAGCCTCCT
LOC_Os05g19620
Os.24057.1.A1_at--510--3811Chr05:11414581..11414605 (25 bp)
CTCCTCTTCACCTTAAATTCCTAGT
LOC_Os05g19620
Os.24057.1.A1_at--935--6771Chr05:11414614..11414638 (25 bp)
GTTAGACGTTGATCCTTTCATCAAT
LOC_Os05g19620
Target Sequence 
AGGTGAGCCAACATTGAACAGCATCAAAATGGGGAGCTAATTGTTCTTCACAGTGAATGGTATGCAGTTCTTGCAGGTTC
AGCTGACAGATCATTGAAAGATGATCATGCCCCACTGTTTGGGACCTTGCAATNTTAGATTTGGCANGTCTATTCTGTTT
TTTTTCTTCTTCTTCTTCCATGCCATTATGCTTCTTGTGTAGCAAGTGATTCTATTCCCAGAAGCACAAGTTCAGGTGTA
CAGAGGCTTGCAATGTAATTGAAACCCCAATTTGGAGCCTCCTCTTCACCTTAAATTCCTAGTGTTGATATGTTAGACGT
TGATCCTTTCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24057.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis