Browse Element(s) Details


Os.24100.1.A1_at

Description gb:AK107279.1
DB_XREF= gi:32992488
TID=Os.24100.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A10, full insert sequence.
FL= gb:AK107279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g097501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24100.1.A1_at--900--671Chr07:10110999..10111023 (25 bp)
ATGAGACATTTTGCACTTTTCCAAG
NONE
Os.24100.1.A1_at--11--3671Chr07:10110984..10111008 (25 bp)
CTTTTCCAAGAACCAGCACTTTGCA
NONE
Os.24100.1.A1_at--302--2991Chr07:10110876..10110900 (25 bp)
AATGTATTGCTACTCCCTTCAGTTT
NONE
Os.24100.1.A1_at--354--8491Chr07:10110782..10110806 (25 bp)
TGGCTGTGATTCTTTTCTACTGTTG
NONE
Os.24100.1.A1_at--626--4471Chr07:10110750..10110774 (25 bp)
GCCTGCAAAGATGTCTTCGATTCTT
NONE
Os.24100.1.A1_at--246--3771Chr07:10110706..10110730 (25 bp)
CTCTTTCATTTTGTACTATCTTCTG
NONE
Os.24100.1.A1_at--170--6912Chr07:10110642..10110666 (25 bp)
GTATCTGACATAATTTAGGGCTGCT
NONE
Os.24100.1.A1_at--734--10071Chr07:10110627..10110651 (25 bp)
TAGGGCTGCTGCAACTTTGTTTTGC
NONE
Os.24100.1.A1_at--975--71Chr07:10110586..10110610 (25 bp)
ATTGCCAGTGCCACTTGTGTTGTAG
NONE
Os.24100.1.A1_at--535--6931Chr07:10110565..10110589 (25 bp)
GTAGGTGAAATTCGCTGTGCATGTA
NONE
Os.24100.1.A1_at--20--7991Chr07:10110537..10110561 (25 bp)
GGATGCGGTTTGAATGCTTATCATA
NONE
Target Sequence 
ATGAGACATTTTGCACTTTTCCAAGAACCAGCACTTTGCAGAAGTGGAGATGAGACATCTTGCTGGAAATAGCACACAGC
AAANCAGATGACTTTACAAAATGGTGATGTAGTGCAGTATTGNAATGTATTGCTACTCCCTTCAGTTTGCAGTTGATGAA
ATTTGCAAGAACCATCCATTGCTTTTGGAATTGATCGTTGGGCAGAATCATAAATTTTGGCTGTGATTCTTTTCTACTGT
TGAATTGAAGCCTGCAAAGATGTCTTCGATTCTTGAAGATGATAGTTTTTTTTCTCTTTCATTTTGTACTATCTTCTGAG
ATTGTAATATAAGGTGTACTTGTCAGCATATATCATAGTATCTGACATAATTTAGGGCTGCTGCAACTTTGTTTTGCAGT
AAAAAGGTGACAGATTGCCAGTGCCACTTGTGTTGTAGGTGAAATTCGCTGTGCATGTAAAAGGATGCGGTTTGAATGCT
TATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24100.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis